The 2.0 version of rSNPBase

Variant report

Variant rs12401299
Chromosome Location chr1:161834446-161834447
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161773400-161854400 Weak transcription Small Intestine intestine
2 chr1:161780600-161836600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:161791800-161842000 Weak transcription Brain Angular Gyrus brain
4 chr1:161792200-161838000 Weak transcription Fetal Brain Male brain
5 chr1:161795200-161860200 Weak transcription Lung lung
6 chr1:161795800-161859000 Weak transcription Pancreas Pancrea
7 chr1:161805800-161838200 Strong transcription Primary monocytes fromperipheralblood blood
8 chr1:161805800-161846200 Strong transcription Monocytes-CD14+_RO01746 blood
9 chr1:161808400-161863200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:161808600-161840200 Weak transcription Right Ventricle heart
11 chr1:161808800-161858800 Weak transcription Spleen Spleen
12 chr1:161809400-161838000 Weak transcription HMEC breast
13 chr1:161810600-161835800 Weak transcription Colonic Mucosa Colon
14 chr1:161811400-161838400 Strong transcription Primary B cells from cord blood blood
15 chr1:161811800-161838200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:161815200-161834600 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr1:161819800-161852600 Weak transcription NHDF-Ad bronchial
18 chr1:161820600-161849200 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:161822000-161836000 Weak transcription HepG2 liver
20 chr1:161822800-161836200 Weak transcription Aorta Aorta
21 chr1:161823600-161839200 Weak transcription Brain Anterior Caudate brain
22 chr1:161823600-161842200 Weak transcription Osteobl bone
23 chr1:161823600-161858800 Weak transcription Thymus Thymus
24 chr1:161823800-161857000 Weak transcription Ovary ovary
25 chr1:161824000-161835800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr1:161824000-161836000 Weak transcription Fetal Kidney kidney
27 chr1:161824000-161838200 Weak transcription HSMMtube muscle
28 chr1:161824000-161840400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:161824000-161842400 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:161824000-161854400 Weak transcription NH-A brain
31 chr1:161824000-161859000 Weak transcription Brain Cingulate Gyrus brain
32 chr1:161824200-161836000 Weak transcription Colon Smooth Muscle Colon
33 chr1:161824200-161838000 Weak transcription HUES48 Cell Line embryonic stem cell
34 chr1:161824200-161838800 Weak transcription Fetal Lung lung
35 chr1:161824200-161841800 Weak transcription NHEK skin
36 chr1:161824200-161842200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:161824200-161854400 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:161824400-161853200 Weak transcription HSMM muscle
40 chr1:161824400-161882000 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr1:161824600-161853400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:161824600-161858600 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr1:161824800-161836000 Weak transcription Fetal Intestine Small intestine
44 chr1:161824800-161839600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr1:161825200-161836000 Weak transcription Rectal Smooth Muscle rectum
46 chr1:161825200-161840600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
47 chr1:161825200-161855000 Weak transcription Fetal Muscle Leg muscle
48 chr1:161825200-161856400 Weak transcription K562 blood
49 chr1:161825600-161838200 Weak transcription Brain Hippocampus Middle brain
50 chr1:161825600-161863200 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015