The 2.0 version of rSNPBase

Variant report

Variant rs6687850
Chromosome Location chr1:161862118-161862119
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161808400-161863200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:161824200-161928400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:161824400-161882000 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr1:161825600-161863200 Weak transcription Fetal Heart heart
5 chr1:161834400-161863200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:161836600-161868000 Weak transcription Fetal Kidney kidney
7 chr1:161836600-161888400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:161841000-161863000 Weak transcription HepG2 liver
9 chr1:161842400-161863600 Weak transcription Brain Angular Gyrus brain
10 chr1:161843200-161864800 Weak transcription Brain Substantia Nigra brain
11 chr1:161854600-161871400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:161855200-161867400 Weak transcription NHEK skin
13 chr1:161855400-161879000 Weak transcription Hela-S3 cervix
14 chr1:161855800-161862200 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr1:161855800-161864400 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:161856000-161862600 Weak transcription Colonic Mucosa Colon
17 chr1:161856000-161863200 Weak transcription Fetal Brain Female brain
18 chr1:161856000-161863200 Weak transcription Osteobl bone
19 chr1:161857600-161862400 Strong transcription Primary T helper cells PMA-I stimulated --
20 chr1:161857600-161863000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:161858000-161862800 Weak transcription Muscle Satellite Cultured Cells --
22 chr1:161858800-161862400 Strong transcription Primary hematopoietic stem cells blood
23 chr1:161859200-161885400 Weak transcription Psoas Muscle Psoas
24 chr1:161859400-161863200 Weak transcription Colon Smooth Muscle Colon
25 chr1:161859400-161867000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr1:161859400-161873600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:161859400-161882600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:161859400-161882800 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:161859800-161862200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr1:161860200-161863200 Weak transcription HUVEC blood vessel
31 chr1:161861200-161863600 Weak transcription Brain Anterior Caudate brain
32 chr1:161861200-161864000 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr1:161861200-161868800 Weak transcription HSMM muscle
34 chr1:161861200-161881200 Weak transcription Ovary ovary
35 chr1:161861400-161863000 Weak transcription Primary monocytes fromperipheralblood blood
36 chr1:161861400-161863200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:161861400-161863200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr1:161861400-161863600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:161861400-161863600 Weak transcription Esophagus oesophagus
40 chr1:161861400-161863600 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr1:161861400-161863600 Weak transcription Spleen Spleen
42 chr1:161861400-161863800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr1:161861400-161864000 Weak transcription Brain Hippocampus Middle brain
44 chr1:161861400-161864000 Weak transcription Right Ventricle heart
45 chr1:161861400-161864200 Weak transcription Fetal Muscle Trunk muscle
46 chr1:161861400-161864200 Weak transcription Fetal Thymus thymus
47 chr1:161861400-161864600 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr1:161861400-161865200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr1:161861400-161873400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr1:161861400-161874600 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015