Variant report

Variant	rs16863838
Chromosome Location	chr1:161735118-161735119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:196)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:196 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:161735005-161735380	ECC-1	luminal epithelium:	n/a	chr1:161735142-161735153
2	CEBPB	chr1:161734933-161735346	A549	lung:	n/a	chr1:161735142-161735153
3	SIN3AK20	chr1:161735010-161735429	A549	lung:	n/a	n/a
4	POLR2A	chr1:161734930-161735364	SK-N-SH	brain:	n/a	n/a
5	SP1	chr1:161734682-161735556	HCT-116	colon:	n/a	n/a
6	FOSL1	chr1:161734917-161735498	HCT-116	colon:	n/a	n/a
7	MAX	chr1:161734886-161735474	MCF-7	breast:	n/a	n/a
8	ARID3A	chr1:161734867-161736503	HepG2	liver:	n/a	n/a
9	HDAC2	chr1:161735038-161735328	H1-hESC	embryonic stem cell:	n/a	n/a
10	MXI1	chr1:161734401-161736955	SK-N-SH	brain:	n/a	n/a
11	CEBPB	chr1:161734965-161735354	A549	lung:	n/a	chr1:161735142-161735153
12	CHD1	chr1:161735102-161735371	H1-hESC	embryonic stem cell:	n/a	n/a
13	EP300	chr1:161734995-161735275	SK-N-SH_RA	brain:	n/a	n/a
14	TAF1	chr1:161735026-161735405	PFSK-1	brain:	n/a	n/a
15	ELK1	chr1:161735036-161735437	Hela-S3	cervix:	n/a	n/a
16	MYC	chr1:161735079-161735311	H1-hESC	embryonic stem cell:	n/a	n/a
17	MAX	chr1:161734626-161735555	HCT-116	colon:	n/a	n/a
18	STAT1	chr1:161734815-161735346	Hela-S3	cervix:	n/a	chr1:161735184-161735195
19	FOSL1	chr1:161734902-161735638	HCT-116	colon:	n/a	n/a
20	REST	chr1:161735091-161735246	PFSK-1	brain:	n/a	n/a
21	MYC	chr1:161735092-161735302	Hela-S3	cervix:	n/a	n/a
22	ZNF143	chr1:161735050-161735417	Hela-S3	cervix:	n/a	n/a
23	MAFK	chr1:161735050-161735272	HepG2	liver:	n/a	n/a
24	POLR2A	chr1:161735073-161735387	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr1:161735009-161736873	MCF10A-Er-Src	breast:	n/a	n/a
26	TBP	chr1:161735093-161735311	GM12878	blood:	n/a	n/a
27	STAT3	chr1:161735074-161735319	GM12878	blood:	n/a	chr1:161735184-161735195
28	POLR2A	chr1:161734890-161735445	SK-N-MC	brain:	n/a	n/a
29	FOS	chr1:161734999-161735364	MCF10A-Er-Src	breast:	n/a	n/a
30	MAX	chr1:161735035-161735369	HepG2	liver:	n/a	n/a
31	MAFK	chr1:161735042-161735278	HepG2	liver:	n/a	n/a
32	CEBPB	chr1:161734994-161735319	K562	blood:	n/a	chr1:161735142-161735153
33	MAX	chr1:161734940-161735458	MCF-7	breast:	n/a	n/a
34	FOS	chr1:161734967-161735368	MCF10A-Er-Src	breast:	n/a	n/a
35	POLR2A	chr1:161734999-161735351	Hela-S3	cervix:	n/a	n/a
36	SIN3AK20	chr1:161734999-161735437	PANC-1	pancreas:	n/a	n/a
37	CUX1	chr1:161735065-161736312	GM12878	blood:	n/a	n/a
38	KAP1	chr1:161734876-161735443	HEK293	kidney:	n/a	n/a
39	POLR2A	chr1:161734903-161735509	SK-N-MC	brain:	n/a	n/a
40	MAX	chr1:161734798-161736695	A549	lung:	n/a	n/a
41	TAF1	chr1:161735064-161735262	SK-N-SH	brain:	n/a	n/a
42	KAP1	chr1:161734800-161735393	U2OS	brain:	n/a	n/a
43	SIN3AK20	chr1:161734931-161735350	PFSK-1	brain:	n/a	n/a
44	BRCA1	chr1:161734945-161735417	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr1:161734965-161735409	MCF-7	breast:	n/a	chr1:161735142-161735153
46	MAFK	chr1:161734989-161735378	Hela-S3	cervix:	n/a	n/a
47	STAT3	chr1:161734954-161735400	MCF10A-Er-Src	breast:	n/a	chr1:161735184-161735195
48	EGR1	chr1:161734798-161735497	HCT-116	colon:	n/a	n/a
49	FOXM1	chr1:161734910-161735658	ECC-1	luminal epithelium:	n/a	n/a
50	MAX	chr1:161734888-161735513	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:161718558..161723568-chr1:161731521..161737462,16	K562	blood:
2	chr1:161718568..161724937-chr1:161732191..161738837,13	K562	blood:
3	chr1:161718595..161726705-chr1:161728119..161739561,22	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FCGR3B-4	chr1:161735115-161735291	XLOC_001070
2	lnc-FCGR3B-4	chr1:161735115-161735291	ENSG00000226889.3

No data

Variant related genes	Relation type
ATF6	TF binding region
ENSG00000081721	Chromatin interaction

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs1006311	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10494358	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10799979	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10917946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10917955	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10918004	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10918079	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10918103	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10918104	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10918124	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1135983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1136046	0.84[CHB][hapmap]
rs12021568	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12021822	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12022305	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12022688	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12023191	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12023770	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12024729	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12025039	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12025560	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12026254	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12026445	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs12028619	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12028953	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12029110	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12029558	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12029726	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12029924	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12030395	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12030544	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12031400	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12032355	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12032568	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12033202	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12033716	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12033967	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12034541	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12035541	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12036425	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12036441	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12036538	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12037266	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12037837	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12038469	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12040518	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12040523	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12040561	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12040648	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042546	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12044164	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12044770	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12045333	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12045431	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12045480	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12046853	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12047724	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12401299	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12401450	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12401782	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12402256	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12402354	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12403862	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12404636	0.90[AMR][1000 genomes]
rs12404798	0.81[AMR][1000 genomes]
rs12405111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12405269	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12405289	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12405533	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12405965	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12407444	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12407741	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12408365	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12409482	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12409812	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1354370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1394067	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1394068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1394069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1503807	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1503816	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1553443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16844014	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16845827	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16846931	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16847590	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16847602	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16849738	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16849963	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16851622	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16853714	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16856629	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16856649	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16857524	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16858058	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16858113	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16860777	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16864153	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1910480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036494	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2036495	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2070150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2070151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2089083	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2089085	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2134692	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2271010	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2271013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340715	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2340716	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2340823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340824	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2341469	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2341473	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2341474	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2341476	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2341477	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2879841	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2879842	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2880056	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3738326	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3817084	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3817085	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3820489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4106114	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4147177	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4147178	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4233378	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4233379	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4278352	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4494120	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4625257	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4656333	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4656334	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4657099	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657100	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4657102	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4657104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4657108	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4657109	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4657110	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4657114	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4657115	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4657116	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4657117	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4657118	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4657120	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55741033	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55828249	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55832042	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs55876359	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56085642	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56310275	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56371448	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59021559	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60035080	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61174548	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6427630	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6427634	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6427635	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6427636	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6427637	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6658423	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6664514	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6669440	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670606	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6672690	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6674081	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6680543	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6682575	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6687850	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6695284	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7412625	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7513303	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7513427	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7519012	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7523416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7530408	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7530997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7532457	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7534981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7535349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7537054	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7542826	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7545293	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7552420	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7554111	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs905596	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs955852	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs957862	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9729115	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9729669	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161720600-161736000	Weak transcription	Spleen	Spleen
2	chr1:161723400-161736000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:161724600-161736000	Weak transcription	Small Intestine	intestine
4	chr1:161724800-161736000	Weak transcription	Gastric	stomach
5	chr1:161726000-161735800	Weak transcription	Esophagus	oesophagus
6	chr1:161726800-161735800	Weak transcription	Lung	lung
7	chr1:161728600-161736000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:161728800-161735400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:161730000-161735200	Weak transcription	Liver	Liver
10	chr1:161733600-161737000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:161733800-161737400	Active TSS	A549	lung
12	chr1:161734000-161735800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:161734400-161736000	Active TSS	HepG2	liver
14	chr1:161734600-161735200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr1:161734600-161735200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:161734600-161735200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr1:161734600-161735400	Active TSS	Monocytes-CD14+_RO01746	blood
18	chr1:161734600-161735800	Active TSS	Brain Germinal Matrix	brain
19	chr1:161734600-161736000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:161734600-161736000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:161734600-161736200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:161734600-161736400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:161734600-161736400	Active TSS	Adipose Nuclei	Adipose
24	chr1:161734600-161736400	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr1:161734600-161736400	Active TSS	Hela-S3	cervix
26	chr1:161734600-161736600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr1:161734600-161736600	Active TSS	Placenta	Placenta
28	chr1:161734600-161736600	Active TSS	Rectal Smooth Muscle	rectum
29	chr1:161734600-161736600	Active TSS	Right Atrium	heart
30	chr1:161734600-161736600	Active TSS	NH-A	brain
31	chr1:161734600-161736800	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr1:161734600-161736800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:161734600-161736800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:161734600-161736800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:161734600-161736800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr1:161734600-161736800	Active TSS	Fetal Intestine Large	intestine
37	chr1:161734600-161736800	Active TSS	Fetal Kidney	kidney
38	chr1:161734600-161736800	Active TSS	Fetal Muscle Leg	muscle
39	chr1:161734600-161736800	Active TSS	Fetal Stomach	stomach
40	chr1:161734600-161736800	Active TSS	HSMM	muscle
41	chr1:161734600-161736800	Active TSS	HSMMtube	muscle
42	chr1:161734600-161736800	Active TSS	HUVEC	blood vessel
43	chr1:161734600-161736800	Active TSS	NHDF-Ad	bronchial
44	chr1:161734600-161736800	Active TSS	NHEK	skin
45	chr1:161734600-161737000	Active TSS	H1 Cell Line	embryonic stem cell
46	chr1:161734600-161737000	Active TSS	H9 Cell Line	embryonic stem cell
47	chr1:161734600-161737000	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr1:161734600-161737000	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr1:161734600-161737000	Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr1:161734600-161737000	Active TSS	Muscle Satellite Cultured Cells	--

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