The 2.0 version of rSNPBase

Variant report

Variant rs12407444
Chromosome Location chr1:161818028-161818029
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:161773400-161854400 Weak transcription Small Intestine intestine
2 chr1:161780400-161824400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:161780600-161823400 Weak transcription A549 lung
4 chr1:161780600-161836600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:161780800-161823000 Weak transcription HSMMtube muscle
6 chr1:161780800-161825800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:161780800-161834000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:161781000-161823000 Weak transcription Fetal Kidney kidney
9 chr1:161785400-161822400 Weak transcription Fetal Intestine Small intestine
10 chr1:161787600-161821000 Weak transcription Stomach Smooth Muscle stomach
11 chr1:161791400-161823000 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr1:161791600-161823000 Weak transcription Fetal Lung lung
13 chr1:161791800-161819800 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr1:161791800-161820800 Weak transcription Brain Hippocampus Middle brain
15 chr1:161791800-161822400 Weak transcription Thymus Thymus
16 chr1:161791800-161823000 Weak transcription Fetal Brain Female brain
17 chr1:161791800-161823600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr1:161791800-161842000 Weak transcription Brain Angular Gyrus brain
19 chr1:161792000-161822400 Weak transcription Aorta Aorta
20 chr1:161792000-161823200 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:161792200-161821000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr1:161792200-161838000 Weak transcription Fetal Brain Male brain
23 chr1:161792600-161818600 Weak transcription Ovary ovary
24 chr1:161795200-161860200 Weak transcription Lung lung
25 chr1:161795400-161822400 Weak transcription Fetal Stomach stomach
26 chr1:161795600-161823000 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:161795800-161827600 Weak transcription Gastric stomach
28 chr1:161795800-161859000 Weak transcription Pancreas Pancrea
29 chr1:161796000-161820600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:161797800-161818600 Weak transcription NHLF lung
31 chr1:161798200-161819800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr1:161798600-161820000 Weak transcription Fetal Muscle Leg muscle
33 chr1:161798800-161818200 Weak transcription Fetal Heart heart
34 chr1:161802200-161823200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
35 chr1:161802400-161825000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr1:161805800-161838200 Strong transcription Primary monocytes fromperipheralblood blood
37 chr1:161805800-161846200 Strong transcription Monocytes-CD14+_RO01746 blood
38 chr1:161806200-161825600 Strong transcription Primary T helper cells PMA-I stimulated --
39 chr1:161806400-161822600 Weak transcription Brain Germinal Matrix brain
40 chr1:161807000-161822400 Weak transcription Fetal Adrenal Gland Adrenal Gland
41 chr1:161808400-161819000 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr1:161808400-161822600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:161808400-161823200 Weak transcription Brain Substantia Nigra brain
44 chr1:161808400-161863200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr1:161808600-161840200 Weak transcription Right Ventricle heart
46 chr1:161808800-161822600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:161808800-161858800 Weak transcription Spleen Spleen
48 chr1:161809200-161827000 Strong transcription Primary B cells from peripheral blood blood
49 chr1:161809400-161838000 Weak transcription HMEC breast
50 chr1:161810000-161818400 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015