The 2.0 version of rSNPBase

Variant report

Variant rs1234103
Chromosome Location chr12:42516106-42516107
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42471800-42524400 Weak transcription Esophagus oesophagus
2 chr12:42474600-42518800 Weak transcription Brain Anterior Caudate brain
3 chr12:42476000-42524400 Weak transcription Gastric stomach
4 chr12:42476200-42524400 Weak transcription Pancreas Pancrea
5 chr12:42476600-42523800 Weak transcription Hela-S3 cervix
6 chr12:42484400-42524800 Weak transcription Right Ventricle heart
7 chr12:42488600-42518600 Weak transcription Fetal Brain Male brain
8 chr12:42492200-42518600 Weak transcription K562 blood
9 chr12:42493000-42524400 Weak transcription Brain Substantia Nigra brain
10 chr12:42493000-42534400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr12:42493200-42518400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr12:42493200-42519200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr12:42497200-42518800 Weak transcription Psoas Muscle Psoas
14 chr12:42499000-42516800 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr12:42499400-42518800 Weak transcription Fetal Kidney kidney
16 chr12:42501000-42518800 Weak transcription Colon Smooth Muscle Colon
17 chr12:42505600-42516800 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr12:42505800-42518400 Weak transcription Fetal Intestine Small intestine
19 chr12:42505800-42518800 Weak transcription H1 Cell Line embryonic stem cell
20 chr12:42505800-42518800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr12:42505800-42518800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr12:42505800-42522400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr12:42505800-42537000 Weak transcription Fetal Stomach stomach
24 chr12:42505800-42537000 Weak transcription Lung lung
25 chr12:42508400-42524600 Weak transcription Fetal Adrenal Gland Adrenal Gland
26 chr12:42508800-42517000 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr12:42509600-42519400 Weak transcription Fetal Muscle Leg muscle
28 chr12:42509800-42518600 Weak transcription H9 Cell Line embryonic stem cell
29 chr12:42509800-42518800 Weak transcription Brain Germinal Matrix brain
30 chr12:42510000-42518800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr12:42511000-42518800 Weak transcription Brain Inferior Temporal Lobe brain
32 chr12:42511200-42519000 Weak transcription Brain Cingulate Gyrus brain
33 chr12:42511600-42518800 Weak transcription NHEK skin
34 chr12:42511800-42518600 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr12:42511800-42518800 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr12:42511800-42518800 Weak transcription Brain Hippocampus Middle brain
37 chr12:42511800-42518800 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr12:42512000-42519000 Weak transcription Rectal Mucosa Donor 29 rectum
39 chr12:42512000-42522200 Weak transcription HMEC breast
40 chr12:42512000-42537400 Weak transcription Ovary ovary
41 chr12:42512400-42519000 Weak transcription Primary B cells from cord blood blood
42 chr12:42512400-42520800 Weak transcription Primary T helper cells PMA-I stimulated --
43 chr12:42512400-42521800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr12:42512400-42523800 Weak transcription Rectal Smooth Muscle rectum
45 chr12:42512400-42523800 Weak transcription HSMM muscle
46 chr12:42512400-42537000 Weak transcription Placenta Placenta
47 chr12:42512600-42517600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr12:42512600-42518200 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr12:42512600-42518400 Weak transcription Fetal Intestine Large intestine
50 chr12:42512600-42518600 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015