Variant report

Variant	rs12408545
Chromosome Location	chr1:223669622-223669623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12136518	0.85[ASN][1000 genomes]
rs12403119	0.93[ASN][1000 genomes]
rs12409225	0.96[ASN][1000 genomes]
rs12411081	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12732440	0.94[ASN][1000 genomes]
rs12735811	0.94[ASN][1000 genomes]
rs12752130	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12760595	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34285879	0.94[ASN][1000 genomes]
rs34766468	0.94[ASN][1000 genomes]
rs35219153	0.94[ASN][1000 genomes]
rs36046682	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3935463	0.85[ASN][1000 genomes]
rs4353087	0.94[ASN][1000 genomes]
rs4402119	0.93[ASN][1000 genomes]
rs4606305	0.93[ASN][1000 genomes]
rs55939627	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56170942	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56296308	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59248273	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61366469	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6604718	0.88[ASN][1000 genomes]
rs6604721	0.94[ASN][1000 genomes]
rs6660728	0.94[ASN][1000 genomes]
rs6667089	0.94[ASN][1000 genomes]
rs6676169	0.84[ASN][1000 genomes]
rs6676669	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6684384	0.81[ASN][1000 genomes]
rs72745975	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745981	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7517145	0.96[ASN][1000 genomes]
rs7549968	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1013538	chr1:223626487-223670776	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223661400-223671600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:223661400-223674000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:223666000-223670200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:223667600-223673200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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