Variant report
| Variant | rs36046682 |
|---|---|
| Chromosome Location | chr1:223709727-223709728 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12403119 | 0.84[ASN][1000 genomes] |
| rs12408545 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12409225 | 0.84[ASN][1000 genomes] |
| rs12411081 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12732440 | 0.86[ASN][1000 genomes] |
| rs12735811 | 0.86[ASN][1000 genomes] |
| rs12752130 | 0.84[ASN][1000 genomes] |
| rs12760595 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34251796 | 0.87[EUR][1000 genomes] |
| rs34285879 | 0.86[ASN][1000 genomes] |
| rs34766468 | 0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs35219153 | 0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4353087 | 0.86[ASN][1000 genomes] |
| rs4402119 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4606305 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55939627 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs56170942 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs56296308 | 0.83[ASN][1000 genomes] |
| rs59248273 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61366469 | 0.84[ASN][1000 genomes] |
| rs6604721 | 0.86[ASN][1000 genomes] |
| rs6660728 | 0.86[ASN][1000 genomes] |
| rs6667089 | 0.80[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6676669 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72745975 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72745981 | 0.84[ASN][1000 genomes] |
| rs7517145 | 0.84[ASN][1000 genomes] |
| rs7549968 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832681 | chr1:223698048-224002691 | Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv873209 | chr1:223707647-223846564 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv873210 | chr1:223707647-223856414 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv873211 | chr1:223707647-223867631 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:223706200-223717800 | Weak transcription | Stomach Mucosa | stomach |
| 2 | chr1:223708400-223709800 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
