Variant report

Variant	rs72745981
Chromosome Location	chr1:223673846-223673847
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223672287..223674921-chr1:223677312..223680286,2	K562	blood:
2	chr1:223649592..223651737-chr1:223672758..223675302,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12136518	0.87[ASN][1000 genomes]
rs12403119	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12408545	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12409225	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411081	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12732440	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12735811	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12752130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760595	0.97[ASN][1000 genomes]
rs34285879	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34766468	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35219153	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36046682	0.84[ASN][1000 genomes]
rs3935463	0.87[ASN][1000 genomes]
rs4353087	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4402119	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4606305	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55939627	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56170942	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56296308	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59248273	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61366469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604718	0.89[ASN][1000 genomes]
rs6604721	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6660728	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6667089	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6676169	0.86[ASN][1000 genomes]
rs6676669	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6684384	0.83[ASN][1000 genomes]
rs72745975	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7517145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549968	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223661400-223674000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:223672600-223675800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:223672800-223674600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:223672800-223674600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:223673000-223675200	Enhancers	HMEC	breast
6	chr1:223673200-223674000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr1:223673200-223674400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:223673200-223674400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:223673200-223674400	Enhancers	HSMM	muscle
10	chr1:223673200-223674400	Enhancers	NHLF	lung
11	chr1:223673200-223674600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:223673200-223674600	Enhancers	Lung	lung
13	chr1:223673200-223674800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr1:223673200-223675000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:223673200-223675000	Enhancers	NH-A	brain
16	chr1:223673400-223674200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:223673400-223674400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:223673400-223674400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:223673400-223674400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:223673400-223674400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:223673400-223674400	Enhancers	Stomach Mucosa	stomach
22	chr1:223673400-223674600	Enhancers	Esophagus	oesophagus
23	chr1:223673400-223674600	Enhancers	NHDF-Ad	bronchial
24	chr1:223673600-223674000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr1:223673600-223674000	Flanking Active TSS	Osteobl	bone
26	chr1:223673600-223674200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:223673600-223674400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr1:223673600-223674400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:223673600-223674400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr1:223673600-223674400	Enhancers	HUVEC	blood vessel
31	chr1:223673800-223674000	Flanking Active TSS	NHEK	skin
32	chr1:223673800-223674200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:223673800-223674400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr1:223673800-223674400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr1:223673800-223674400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:223673800-223674400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:223673800-223674600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr1:223673800-223675200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links