Variant report

Variant	rs12760595
Chromosome Location	chr1:223692744-223692745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223686710..223689558-chr1:223691137..223693488,3	K562	blood:
2	chr1:223686010..223688947-chr1:223690365..223692889,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12136518	0.87[ASN][1000 genomes]
rs12403119	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12408545	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12409225	0.97[ASN][1000 genomes]
rs12411081	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12732440	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12735811	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12752130	0.97[ASN][1000 genomes]
rs34251796	0.87[EUR][1000 genomes]
rs34285879	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34766468	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35219153	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36046682	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3935463	0.87[ASN][1000 genomes]
rs4353087	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4402119	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4606305	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55939627	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56170942	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56296308	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59248273	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61366469	0.97[ASN][1000 genomes]
rs6604718	0.89[ASN][1000 genomes]
rs6604721	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6660728	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6667089	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6676169	0.86[ASN][1000 genomes]
rs6676669	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6684384	0.83[ASN][1000 genomes]
rs72745975	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72745981	0.97[ASN][1000 genomes]
rs7517145	0.97[ASN][1000 genomes]
rs7549968	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223690200-223693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:223691400-223699600	Weak transcription	Primary T cells from cord blood	blood

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