Variant report

Variant	rs34766468
Chromosome Location	chr1:223685201-223685202
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223680980..223683088-chr1:223683400..223685832,2	MCF-7	breast:
2	chr1:223682735..223685673-chr1:223687995..223689647,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12136518	0.88[ASN][1000 genomes]
rs12403119	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408545	0.94[ASN][1000 genomes]
rs12409225	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12411081	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12732440	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12735811	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12752130	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12760595	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34285879	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35219153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046682	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3935463	0.88[ASN][1000 genomes]
rs4353087	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4402119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4606305	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55939627	0.94[ASN][1000 genomes]
rs56170942	0.97[ASN][1000 genomes]
rs56296308	0.97[ASN][1000 genomes]
rs59248273	0.97[ASN][1000 genomes]
rs61366469	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6604718	0.90[ASN][1000 genomes]
rs6604721	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660728	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667089	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676169	0.87[ASN][1000 genomes]
rs6676669	0.97[ASN][1000 genomes]
rs6684384	0.84[ASN][1000 genomes]
rs72745975	0.97[ASN][1000 genomes]
rs72745981	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7517145	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7549968	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223683200-223686800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:223683400-223685800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr1:223683400-223686800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:223683800-223686400	Weak transcription	Primary T cells from cord blood	blood
5	chr1:223684800-223689000	Weak transcription	Right Atrium	heart
6	chr1:223685000-223685800	Enhancers	HMEC	breast
7	chr1:223685000-223686200	Enhancers	Placenta	Placenta
8	chr1:223685200-223686000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:223685200-223689000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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