Variant report

Variant	rs61366469
Chromosome Location	chr1:223673429-223673430
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223672287..223674921-chr1:223677312..223680286,2	K562	blood:
2	chr1:223649592..223651737-chr1:223672758..223675302,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12136518	0.87[ASN][1000 genomes]
rs12403119	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12408545	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12409225	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411081	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12732440	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12735811	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12752130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12760595	0.97[ASN][1000 genomes]
rs34285879	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34766468	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35219153	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36046682	0.84[ASN][1000 genomes]
rs3935463	0.87[ASN][1000 genomes]
rs4353087	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4402119	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4606305	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55939627	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56170942	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56296308	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59248273	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6604718	0.89[ASN][1000 genomes]
rs6604721	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6660728	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6667089	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6676169	0.86[ASN][1000 genomes]
rs6676669	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6684384	0.83[ASN][1000 genomes]
rs72745975	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72745981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549968	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223661400-223674000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:223672600-223675800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:223672800-223673600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:223672800-223673800	Enhancers	NHEK	skin
5	chr1:223672800-223674600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:223672800-223674600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:223673000-223675200	Enhancers	HMEC	breast
8	chr1:223673200-223673600	Enhancers	Osteobl	bone
9	chr1:223673200-223674000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:223673200-223674400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:223673200-223674400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:223673200-223674400	Enhancers	HSMM	muscle
13	chr1:223673200-223674400	Enhancers	NHLF	lung
14	chr1:223673200-223674600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:223673200-223674600	Enhancers	Lung	lung
16	chr1:223673200-223674800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:223673200-223675000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:223673200-223675000	Enhancers	NH-A	brain
19	chr1:223673400-223673800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr1:223673400-223673800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:223673400-223673800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:223673400-223674200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:223673400-223674400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:223673400-223674400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:223673400-223674400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:223673400-223674400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:223673400-223674400	Enhancers	Stomach Mucosa	stomach
28	chr1:223673400-223674600	Enhancers	Esophagus	oesophagus
29	chr1:223673400-223674600	Enhancers	NHDF-Ad	bronchial

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