Variant report

Variant	rs56170942
Chromosome Location	chr1:223656063-223656064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223654765..223657553-chr1:223659918..223661675,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12136518	0.91[ASN][1000 genomes]
rs12403119	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12408545	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12409225	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12411081	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12732440	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12735811	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12752130	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12760595	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34285879	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs34766468	0.97[ASN][1000 genomes]
rs35219153	0.97[ASN][1000 genomes]
rs36046682	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3935463	0.91[ASN][1000 genomes]
rs4353087	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4402119	0.96[ASN][1000 genomes]
rs4606305	0.96[ASN][1000 genomes]
rs55939627	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56296308	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59248273	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61366469	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6604718	0.93[ASN][1000 genomes]
rs6604721	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6660728	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6667089	0.97[ASN][1000 genomes]
rs6676169	0.89[ASN][1000 genomes]
rs6676669	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684384	0.87[ASN][1000 genomes]
rs72745975	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72745981	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7517145	0.96[ASN][1000 genomes]
rs7549968	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1013538	chr1:223626487-223670776	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223653200-223660800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:223654200-223661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:223655600-223656400	Enhancers	GM12878-XiMat	blood
4	chr1:223655800-223656800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:223655800-223657200	Enhancers	Placenta	Placenta
6	chr1:223656000-223656600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr1:223656000-223656600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:223656000-223656600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:223656000-223657000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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