Variant report

Variant	rs12563434
Chromosome Location	chr1:225079550-225079551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr1:225079446-225079805	K562	blood:	n/a	n/a

Variant related genes	Relation type
DNAH14	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10158926	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1110379	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1506069	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1506071	0.84[ASN][1000 genomes]
rs1506074	0.83[ASN][1000 genomes]
rs1936635	0.95[EUR][1000 genomes]
rs2014656	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2014667	0.99[ASN][1000 genomes]
rs2051158	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2128268	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2244102	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2244126	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2254158	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254406	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449256	0.87[ASN][1000 genomes]
rs2449258	0.87[ASN][1000 genomes]
rs2449287	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2449304	0.84[ASN][1000 genomes]
rs2449322	0.88[ASN][1000 genomes]
rs2456336	0.86[ASN][1000 genomes]
rs2456341	0.80[ASN][1000 genomes]
rs2456349	0.86[ASN][1000 genomes]
rs2489296	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2489298	0.88[ASN][1000 genomes]
rs2489301	0.88[ASN][1000 genomes]
rs2489314	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489327	0.87[ASN][1000 genomes]
rs2489337	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2489343	0.87[ASN][1000 genomes]
rs2489346	0.88[ASN][1000 genomes]
rs2489348	0.88[ASN][1000 genomes]
rs2489352	0.88[ASN][1000 genomes]
rs2489353	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489355	0.97[ASN][1000 genomes]
rs2501099	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2501100	0.84[ASN][1000 genomes]
rs2501101	0.84[ASN][1000 genomes]
rs2501110	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2501133	0.85[ASN][1000 genomes]
rs2929626	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2939363	0.86[ASN][1000 genomes]
rs3102106	0.87[ASN][1000 genomes]
rs3120991	0.86[AMR][1000 genomes]
rs3128657	0.80[AMR][1000 genomes]
rs3128664	0.86[AMR][1000 genomes]
rs57137890	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59420435	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849768	0.84[ASN][1000 genomes]
rs6426163	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72629701	0.95[EUR][1000 genomes]
rs72629702	0.95[EUR][1000 genomes]
rs7530659	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16888	chr1:225075528-225081091	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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