Variant report

Variant	rs12664852
Chromosome Location	chr6:143809939-143809940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143809422..143811493-chr6:143814046..143815770,2	K562	blood:
2	chr6:143804354..143808777-chr6:143809039..143815242,7	K562	blood:
3	chr6:143774402..143777046-chr6:143808745..143811198,2	K562	blood:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction
ENSG00000229036	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1338532	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17072588	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072608	0.89[AMR][1000 genomes]
rs17072619	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072691	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789786	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4895616	0.91[EUR][1000 genomes]
rs4896655	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4896657	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4896658	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
6	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
10	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:143773400-143814200	Weak transcription	K562	blood
12	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
13	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
14	chr6:143773400-143815000	Weak transcription	A549	lung
15	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
17	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine
22	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:143784600-143814800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:143784800-143814800	Weak transcription	NHLF	lung
25	chr6:143790200-143811600	Weak transcription	Pancreas	Pancrea
26	chr6:143790200-143811600	Weak transcription	Spleen	Spleen
27	chr6:143790200-143814800	Weak transcription	Small Intestine	intestine
28	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
29	chr6:143790200-143831600	Weak transcription	Gastric	stomach
30	chr6:143791600-143811800	Weak transcription	Thymus	Thymus
31	chr6:143791800-143811600	Weak transcription	Lung	lung
32	chr6:143792800-143814800	Weak transcription	NHDF-Ad	bronchial
33	chr6:143793600-143810200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:143793600-143819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:143794000-143814600	Weak transcription	NH-A	brain
36	chr6:143794400-143814800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:143794400-143814800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:143794400-143816000	Weak transcription	Brain Substantia Nigra	brain
39	chr6:143794600-143814800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:143794600-143819400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:143794800-143817800	Weak transcription	HSMMtube	muscle
42	chr6:143795000-143812000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr6:143795200-143827400	Weak transcription	Aorta	Aorta
44	chr6:143795400-143814800	Weak transcription	Osteobl	bone
45	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:143796600-143814400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:143796600-143814600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:143796600-143814600	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:143796800-143811400	Weak transcription	NHEK	skin
50	chr6:143796800-143811600	Weak transcription	Fetal Stomach	stomach

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