Variant report

Variant	rs17072588
Chromosome Location	chr6:143740021-143740022
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143739140..143741318-chr6:143771137..143773087,2	MCF-7	breast:
2	chr6:143739328..143741392-chr6:143767117..143770115,2	K562	blood:
3	chr6:143730112..143731912-chr6:143738511..143740058,2	K562	blood:
4	chr6:143738518..143740426-chr6:143740764..143742768,2	K562	blood:
5	chr6:143737366..143741274-chr6:143742822..143747466,4	K562	blood:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction
ENSG00000189007	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12664852	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1338532	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072608	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17072619	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072691	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3789786	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896658	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896661	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896662	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143706600-143757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143719200-143753200	Weak transcription	Aorta	Aorta
3	chr6:143724200-143748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:143727600-143753200	Weak transcription	Ovary	ovary
6	chr6:143731800-143743400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:143731800-143747400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:143732600-143751000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:143732600-143753200	Weak transcription	Hela-S3	cervix
10	chr6:143733200-143770400	Weak transcription	A549	lung
11	chr6:143733600-143747400	Weak transcription	K562	blood
12	chr6:143734800-143743400	Weak transcription	NHEK	skin
13	chr6:143735000-143743000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143735000-143750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143735200-143743600	Weak transcription	HMEC	breast
16	chr6:143737200-143749200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:143739200-143750800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:143739200-143752000	Weak transcription	GM12878-XiMat	blood
19	chr6:143739600-143740200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:143739600-143743200	Weak transcription	Fetal Stomach	stomach
21	chr6:143739600-143749000	Weak transcription	HepG2	liver
22	chr6:143739800-143753200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links