Variant report

Variant	rs4896658
Chromosome Location	chr6:143785199-143785200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143769522..143771078-chr6:143784851..143787371,2	K562	blood:
2	chr6:143783190..143786094-chr6:143789644..143792866,3	K562	blood:
3	chr6:143781318..143783758-chr6:143784229..143785945,2	MCF-7	breast:
4	chr6:143770421..143772102-chr6:143784694..143787391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189007	Chromatin interaction
ENSG00000034693	Chromatin interaction
ENSG00000223203	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12664852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338532	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17072588	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072608	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17072619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896655	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896657	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896662	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143790000	Weak transcription	Pancreas	Pancrea
2	chr6:143772600-143790000	Weak transcription	Spleen	Spleen
3	chr6:143772600-143791200	Weak transcription	Lung	lung
4	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
10	chr6:143773000-143791400	Weak transcription	Thymus	Thymus
11	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
13	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
16	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
20	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:143773400-143791400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:143773400-143791400	Weak transcription	Brain Angular Gyrus	brain
26	chr6:143773400-143792800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:143773400-143814200	Weak transcription	K562	blood
29	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
30	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
31	chr6:143773400-143815000	Weak transcription	A549	lung
32	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
34	chr6:143774400-143792800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr6:143775000-143796200	Weak transcription	Fetal Brain Female	brain
37	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:143778200-143793000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:143778800-143794200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:143779000-143794000	Weak transcription	GM12878-XiMat	blood
42	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:143779200-143790000	Weak transcription	Small Intestine	intestine
44	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:143779400-143794200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:143779400-143796000	Weak transcription	Fetal Kidney	kidney
47	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:143779600-143787600	Weak transcription	Fetal Heart	heart
49	chr6:143779600-143791600	Weak transcription	NHDF-Ad	bronchial
50	chr6:143779600-143793600	Weak transcription	NH-A	brain

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