Variant report

Variant	rs4896661
Chromosome Location	chr6:143793155-143793156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143788771..143790520-chr6:143792643..143794191,2	MCF-7	breast:
2	chr6:143786704..143788692-chr6:143792159..143793935,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12664852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338532	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17072588	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072608	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17072619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3789786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896655	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896657	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896658	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896662	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
7	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
9	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
12	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
16	chr6:143773200-143793600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
18	chr6:143773400-143796800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:143773400-143814200	Weak transcription	K562	blood
20	chr6:143773400-143814600	Weak transcription	HUVEC	blood vessel
21	chr6:143773400-143814800	Weak transcription	Hela-S3	cervix
22	chr6:143773400-143815000	Weak transcription	A549	lung
23	chr6:143773400-143818200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
25	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:143775000-143796200	Weak transcription	Fetal Brain Female	brain
27	chr6:143776200-143796400	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:143777800-143796800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:143778800-143794200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:143779000-143794000	Weak transcription	GM12878-XiMat	blood
31	chr6:143779000-143818200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:143779200-143816800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:143779400-143794200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:143779400-143796000	Weak transcription	Fetal Kidney	kidney
35	chr6:143779400-143804600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:143779600-143793600	Weak transcription	NH-A	brain
37	chr6:143779600-143793600	Weak transcription	Osteobl	bone
38	chr6:143780200-143796200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:143781200-143798000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:143781200-143800200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:143782200-143793600	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:143782400-143793200	Weak transcription	Brain Anterior Caudate	brain
44	chr6:143782600-143793800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:143782600-143793800	Weak transcription	Fetal Muscle Leg	muscle
46	chr6:143782600-143794200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr6:143782600-143796600	Weak transcription	HMEC	breast
48	chr6:143783000-143793600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:143783000-143794200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:143783000-143814600	Weak transcription	Fetal Intestine Small	intestine

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