Variant report

Variant	rs1338532
Chromosome Location	chr6:143818240-143818241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143815651..143818272-chr6:143830902..143832813,2	MCF-7	breast:
2	chr6:143804689..143809307-chr6:143816988..143822898,5	K562	blood:
3	chr6:143807229..143809804-chr6:143817581..143819353,2	MCF-7	breast:
4	chr6:143801164..143803858-chr6:143817519..143820066,2	K562	blood:
5	chr6:143781678..143783968-chr6:143818043..143819942,2	K562	blood:

Variant related genes	Relation type
ENSG00000229036	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000034693	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12664852	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17072588	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072608	0.84[AMR][1000 genomes]
rs17072619	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789786	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4895616	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4896655	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4896657	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4896658	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896661	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896662	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
3	chr6:143773200-143827000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
5	chr6:143774400-143819400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:143783200-143818400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
9	chr6:143790200-143831600	Weak transcription	Gastric	stomach
10	chr6:143793600-143819400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:143794600-143819400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:143795200-143827400	Weak transcription	Aorta	Aorta
13	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:143797000-143826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143797400-143819200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:143798200-143819400	Weak transcription	Fetal Thymus	thymus
18	chr6:143798400-143819400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:143798800-143819600	Weak transcription	Fetal Brain Female	brain
20	chr6:143798800-143821400	Weak transcription	HMEC	breast
21	chr6:143799000-143827000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:143799400-143819200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:143801200-143819400	Weak transcription	Dnd41	blood
25	chr6:143802200-143818600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:143805200-143827800	Weak transcription	Fetal Heart	heart
27	chr6:143808600-143818400	Weak transcription	Primary B cells from cord blood	blood
28	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:143811800-143829400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:143812000-143827400	Weak transcription	Pancreas	Pancrea
31	chr6:143812200-143819400	Weak transcription	Thymus	Thymus
32	chr6:143812200-143831600	Weak transcription	Right Ventricle	heart
33	chr6:143812400-143820800	Weak transcription	Lung	lung
34	chr6:143812400-143826800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:143812400-143829600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
37	chr6:143812600-143831800	Weak transcription	NHEK	skin
38	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:143812800-143818800	Weak transcription	Primary T cells from cord blood	blood
40	chr6:143813000-143826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:143813400-143828400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr6:143813400-143829600	Strong transcription	Fetal Intestine Large	intestine
43	chr6:143813800-143828400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:143814200-143825600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr6:143814200-143828200	Strong transcription	HSMM	muscle
46	chr6:143814200-143828800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:143814200-143829600	Strong transcription	K562	blood
48	chr6:143814400-143819600	Strong transcription	GM12878-XiMat	blood
49	chr6:143814400-143825600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:143814400-143830200	Strong transcription	Primary monocytes fromperipheralblood	blood

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