Variant report

Variant	rs17072619
Chromosome Location	chr6:143774311-143774312
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143771955..143774929-chr6:143804997..143806863,2	K562	blood:
2	chr6:143770206..143776731-chr6:143830754..143834661,9	K562	blood:

Variant related genes	Relation type
ENSG00000034693	Chromatin interaction
ENSG00000229036	Chromatin interaction
ENSG00000001036	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12664852	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1338532	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072588	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072608	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17072691	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3789786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896655	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896657	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772400-143778800	Weak transcription	Small Intestine	intestine
2	chr6:143772600-143780600	Weak transcription	Left Ventricle	heart
3	chr6:143772600-143780800	Weak transcription	Esophagus	oesophagus
4	chr6:143772600-143790000	Weak transcription	Pancreas	Pancrea
5	chr6:143772600-143790000	Weak transcription	Spleen	Spleen
6	chr6:143772600-143791200	Weak transcription	Lung	lung
7	chr6:143772600-143811600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:143772800-143774400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:143772800-143774400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:143772800-143774400	Weak transcription	Aorta	Aorta
12	chr6:143772800-143774600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:143772800-143780600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:143772800-143780600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:143772800-143780600	Weak transcription	Placenta	Placenta
16	chr6:143772800-143780800	Weak transcription	Fetal Thymus	thymus
17	chr6:143772800-143784000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:143772800-143796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:143772800-143798600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:143772800-143815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:143772800-143821200	Weak transcription	Psoas Muscle	Psoas
22	chr6:143773000-143774400	Weak transcription	HSMM	muscle
23	chr6:143773000-143774600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:143773000-143774600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:143773000-143774600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:143773000-143778800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:143773000-143780400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:143773000-143780600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:143773000-143780600	Weak transcription	Fetal Intestine Large	intestine
30	chr6:143773000-143780600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr6:143773000-143781800	Weak transcription	Fetal Stomach	stomach
32	chr6:143773000-143782000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:143773000-143782000	Weak transcription	Ovary	ovary
34	chr6:143773000-143784000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:143773000-143791400	Weak transcription	Thymus	Thymus
36	chr6:143773000-143793400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:143773000-143793600	Weak transcription	HSMMtube	muscle
38	chr6:143773000-143797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:143773000-143801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:143773000-143811600	Weak transcription	Right Ventricle	heart
41	chr6:143773000-143814600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:143773000-143814800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:143773000-143815000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:143773000-143815000	Weak transcription	Colonic Mucosa	Colon
45	chr6:143773200-143774800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:143773200-143775000	Enhancers	Fetal Brain Female	brain
47	chr6:143773200-143780200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:143773200-143780600	Weak transcription	Adipose Nuclei	Adipose
49	chr6:143773200-143793000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:143773200-143793000	Weak transcription	Brain Substantia Nigra	brain

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