Variant report

Variant	rs4896657
Chromosome Location	chr6:143758597-143758598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:143758518-143758628	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000268402	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12664852	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1338532	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17072588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072608	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17072619	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072691	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3789786	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896658	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896661	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4896662	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143726800-143765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:143733200-143770400	Weak transcription	A549	lung
3	chr6:143742400-143770800	Weak transcription	Spleen	Spleen
4	chr6:143742800-143770200	Weak transcription	Psoas Muscle	Psoas
5	chr6:143744400-143770800	Weak transcription	Left Ventricle	heart
6	chr6:143744800-143760800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:143745800-143770600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:143746600-143759400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:143747400-143762800	Strong transcription	K562	blood
10	chr6:143747400-143770600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:143747800-143758800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:143748000-143759000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:143748000-143770400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:143748200-143770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:143748400-143762600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:143748400-143762600	Weak transcription	Osteobl	bone
17	chr6:143748400-143770400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:143748400-143770600	Weak transcription	Fetal Kidney	kidney
19	chr6:143748400-143770600	Weak transcription	NHDF-Ad	bronchial
20	chr6:143748400-143770600	Weak transcription	NHLF	lung
21	chr6:143749200-143760200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:143749400-143762800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:143749400-143770400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:143749600-143770800	Weak transcription	Esophagus	oesophagus
25	chr6:143749800-143770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:143750800-143762800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:143750800-143770200	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:143750800-143770200	Weak transcription	Thymus	Thymus
29	chr6:143751000-143770800	Weak transcription	HSMMtube	muscle
30	chr6:143751400-143759600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:143751400-143761000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:143751600-143770200	Weak transcription	Fetal Intestine Small	intestine
33	chr6:143751600-143770400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:143751600-143770800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:143752000-143763000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:143752200-143762800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:143752200-143765000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:143752200-143765000	Weak transcription	Small Intestine	intestine
39	chr6:143752400-143760200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:143752400-143770200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:143752600-143762600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:143752600-143766400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:143752600-143770600	Weak transcription	Brain Substantia Nigra	brain
44	chr6:143753000-143770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:143753200-143760200	Strong transcription	Primary T cells from cord blood	blood
46	chr6:143753400-143759400	Strong transcription	NHEK	skin
47	chr6:143753400-143760000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:143753800-143758800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:143753800-143759600	Weak transcription	Adipose Nuclei	Adipose
50	chr6:143753800-143761000	Weak transcription	Aorta	Aorta

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