Variant report

Variant rs12978914
Chromosome Location chr19:39223717-39223718
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:39182200-39225200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:39211200-39224000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
3 chr19:39213400-39224400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr19:39213800-39224400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr19:39214000-39224800 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr19:39214400-39224000 Weak transcription Primary hematopoietic stem cells blood
7 chr19:39215600-39224000 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
8 chr19:39215600-39224800 Genic enhancers A549 lung
9 chr19:39216200-39223800 Weak transcription Fetal Thymus thymus
10 chr19:39217000-39224400 Genic enhancers Fetal Intestine Large intestine
11 chr19:39217200-39224400 Genic enhancers Fetal Intestine Small intestine
12 chr19:39217800-39224200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr19:39217800-39224200 Weak transcription GM12878-XiMat blood
14 chr19:39218000-39225000 Weak transcription Primary T cells from cord blood blood
15 chr19:39218000-39226800 Weak transcription Psoas Muscle Psoas
16 chr19:39218400-39224600 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr19:39218600-39225200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr19:39218800-39225200 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr19:39218800-39226600 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr19:39219000-39223800 Strong transcription Primary hematopoietic stem cells short term culture blood
21 chr19:39219000-39224000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr19:39219400-39224600 Weak transcription Primary T helper cells PMA-I stimulated --
23 chr19:39220000-39224400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr19:39220800-39223800 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr19:39220800-39224600 Weak transcription Primary T helper naive cells fromperipheralblood blood
26 chr19:39220800-39226800 Weak transcription Colon Smooth Muscle Colon
27 chr19:39221200-39224000 Strong transcription Placenta Amnion Placenta Amnion
28 chr19:39221200-39225400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr19:39221200-39226000 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr19:39221600-39224000 Weak transcription NHDF-Ad bronchial
31 chr19:39221800-39224000 Genic enhancers Fetal Muscle Trunk muscle
32 chr19:39221800-39224000 Genic enhancers HMEC breast
33 chr19:39221800-39224600 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr19:39222000-39223800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr19:39222000-39224200 Weak transcription Small Intestine intestine
36 chr19:39222000-39225200 Enhancers Pancreas Pancrea
37 chr19:39222200-39224200 Genic enhancers Fetal Muscle Leg muscle
38 chr19:39222200-39224800 Enhancers Rectal Mucosa Donor 31 rectum
39 chr19:39222200-39225200 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr19:39222200-39226200 Enhancers Skeletal Muscle Female skeletal muscle
41 chr19:39222200-39226800 Weak transcription Brain Substantia Nigra brain
42 chr19:39222400-39223800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr19:39222400-39224000 Weak transcription Primary B cells from cord blood blood
44 chr19:39222400-39224800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr19:39222400-39224800 Weak transcription Fetal Brain Female brain
46 chr19:39222400-39225000 Enhancers Duodenum Mucosa Duodenum
47 chr19:39222400-39225400 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr19:39222400-39226200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr19:39222400-39226600 Weak transcription Brain Cingulate Gyrus brain
50 chr19:39222400-39226800 Weak transcription Brain Angular Gyrus brain

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