Variant report

Variant	rs12975256
Chromosome Location	chr19:39198320-39198321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:39198003-39199640	U87	brain:	n/a	n/a
2	RCOR1	chr19:39198086-39198866	IMR90	lung:	n/a	n/a
3	POLR2A	chr19:39197878-39198597	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr19:39197909-39198391	HL-60	blood:	n/a	n/a
5	CTCF	chr19:39198280-39198430	HUVEC	blood vessel:	n/a	n/a
6	EP300	chr19:39198070-39198471	T-47D	breast:	n/a	n/a
7	REST	chr19:39198138-39198697	PANC-1	pancreas:	n/a	n/a
8	TCF12	chr19:39197499-39198877	A549	lung:	n/a	chr19:39198846-39198856
9	FOS	chr19:39198129-39198916	HUVEC	blood vessel:	n/a	chr19:39198667-39198677
10	NFIC	chr19:39197881-39198643	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr19:39198016-39198966	K562	blood:	n/a	n/a
12	POLR2A	chr19:39198106-39198929	HepG2	liver:	n/a	n/a
13	POLR2A	chr19:39197449-39199633	A549	lung:	n/a	n/a
14	POLR2A	chr19:39198122-39198829	U87	brain:	n/a	n/a
15	MYC	chr19:39198161-39198759	HUVEC	blood vessel:	n/a	n/a
16	USF1	chr19:39198196-39198377	SK-N-SH_RA	brain:	n/a	n/a
17	POLR2A	chr19:39197849-39198905	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr19:39198084-39198456	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr19:39197961-39198840	HUVEC	blood vessel:	n/a	n/a
20	FOXP2	chr19:39198198-39198458	PFSK-1	brain:	n/a	n/a
21	CTCF	chr19:39198180-39198330	HUVEC	blood vessel:	n/a	n/a
22	JUND	chr19:39197989-39198909	A549	lung:	n/a	chr19:39198667-39198677
23	NR2F2	chr19:39198014-39198738	MCF-7	breast:	n/a	n/a
24	POLR2A	chr19:39164600-39206677	PANC-1	pancreas:	n/a	n/a
25	POLR2A	chr19:39198320-39198347	MCF-7	breast:	n/a	n/a
26	POLR2A	chr19:39198225-39199660	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr19:39197853-39198402	SK-N-SH	brain:	n/a	n/a
28	EP300	chr19:39198112-39198470	T-47D	breast:	n/a	n/a
29	POLR2A	chr19:39197937-39199010	K562	blood:	n/a	n/a
30	FOXA1	chr19:39198158-39198441	T-47D	breast:	n/a	n/a
31	POLR2A	chr19:39198149-39198829	U87	brain:	n/a	n/a
32	EP300	chr19:39198300-39198334	K562	blood:	n/a	n/a
33	POLR2A	chr19:39164601-39206634	PANC-1	pancreas:	n/a	n/a
34	NFIC	chr19:39197939-39198659	ECC-1	luminal epithelium:	n/a	n/a
35	POLR2A	chr19:39198003-39198913	U87	brain:	n/a	n/a
36	RAD21	chr19:39198134-39198442	SK-N-SH_RA	brain:	n/a	chr19:39198331-39198344

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:39135966..39142009-chr19:39184894..39201240,23	MCF-7	breast:
2	chr19:39196541..39198571-chr19:39208360..39211296,2	K562	blood:
3	chr19:39198023..39200060-chr19:39200428..39202731,2	K562	blood:

No data

Variant related genes	Relation type
ACTN4	TF binding region
ENSG00000130402	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1105759	0.83[ASN][1000 genomes]
rs1106372	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1136956	0.91[ASN][1000 genomes]
rs12971309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12972987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12972997	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12974733	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12975079	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12975953	0.96[AMR][1000 genomes]
rs12976598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12977238	0.83[EUR][1000 genomes]
rs12977599	0.80[AFR][1000 genomes]
rs12978273	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12978715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12978914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12979947	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12980399	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12981131	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12981984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12983010	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12983550	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12984794	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12985030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12985558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12985871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12986032	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12986121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12986337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17589359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2001856	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2086148	0.83[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2279145	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34026184	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34054765	1.00[AMR][1000 genomes]
rs34082501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34105297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34126343	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34134906	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34305426	1.00[AMR][1000 genomes]
rs34332511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34368672	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34525537	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34558140	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34563817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34592527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34695688	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34703567	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34717167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34843929	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34862518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34899634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34911882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35007285	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35074956	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35096737	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35134120	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35193699	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35281901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35403788	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35436155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35576862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35640008	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35666464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35685980	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35691365	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35716073	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35729716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807146	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35855940	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35856174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35941349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3786840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs45599933	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56817884	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56946356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57230275	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60454376	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61121905	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62119101	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62119102	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62119103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62119105	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62119109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62119115	0.91[ASN][1000 genomes]
rs62119116	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62120068	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62120072	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62120074	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62120159	0.92[AFR][1000 genomes]
rs62121763	0.80[AFR][1000 genomes]
rs62121819	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62121821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62121823	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62121827	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62121828	0.84[AFR][1000 genomes]
rs62121829	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71356822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7246368	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7248577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7260070	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs732135	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs8103530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8104815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8105216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833828	chr19:39084759-39257979	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv817834	chr19:39174332-39237950	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv911668	chr19:39174669-39291771	Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	esv1826260	chr19:39178364-39248836	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	esv3329584	chr19:39196712-39204110	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv911669	chr19:39196745-39231548	Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12975256	EIF3K	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39164400-39200200	Genic enhancers	Fetal Intestine Small	intestine
2	chr19:39179600-39205800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr19:39182200-39214200	Genic enhancers	Fetal Muscle Trunk	muscle
4	chr19:39182200-39225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:39184800-39205800	Genic enhancers	A549	lung
6	chr19:39185200-39205800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr19:39186400-39213400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr19:39187200-39201200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
9	chr19:39187200-39205800	Genic enhancers	Right Ventricle	heart
10	chr19:39187800-39198600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr19:39189400-39223400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:39189800-39222800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr19:39190000-39203800	Strong transcription	H9 Cell Line	embryonic stem cell
14	chr19:39190000-39205800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr19:39190000-39208800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr19:39190000-39218400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr19:39190200-39222600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr19:39190200-39222800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr19:39190400-39206000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
20	chr19:39190400-39208400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr19:39190400-39209200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr19:39190400-39212000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr19:39190400-39212200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:39190400-39217000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr19:39190400-39218000	Strong transcription	Primary T cells from cord blood	blood
26	chr19:39190400-39222400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr19:39190400-39222600	Strong transcription	Dnd41	blood
28	chr19:39190600-39199800	Strong transcription	NHEK	skin
29	chr19:39190600-39202800	Strong transcription	GM12878-XiMat	blood
30	chr19:39190600-39203200	Strong transcription	K562	blood
31	chr19:39190600-39205400	Genic enhancers	Spleen	Spleen
32	chr19:39190600-39205600	Strong transcription	Fetal Brain Female	brain
33	chr19:39190600-39209000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr19:39190600-39209200	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr19:39190600-39216400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr19:39190600-39217000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:39190600-39219600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr19:39190600-39222800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr19:39190800-39220400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr19:39190800-39222600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr19:39190800-39222600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr19:39190800-39222800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr19:39190800-39223000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr19:39190800-39223000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr19:39191000-39203200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:39191000-39205800	Genic enhancers	Left Ventricle	heart
47	chr19:39191000-39222400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr19:39191000-39222600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr19:39191400-39205800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr19:39191400-39209400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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