Variant report

Variant rs12980399
Chromosome Location chr19:39218395-39218396
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:39182200-39225200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:39189400-39223400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr19:39189800-39222800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
4 chr19:39190000-39218400 Strong transcription Primary hematopoietic stem cells short term culture blood
5 chr19:39190200-39222600 Strong transcription Primary monocytes fromperipheralblood blood
6 chr19:39190200-39222800 Strong transcription HUES48 Cell Line embryonic stem cell
7 chr19:39190400-39222400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr19:39190400-39222600 Strong transcription Dnd41 blood
9 chr19:39190600-39219600 Strong transcription iPS-20b Cell Line embryonic stem cell
10 chr19:39190600-39222800 Strong transcription HUES64 Cell Line embryonic stem cell
11 chr19:39190800-39220400 Strong transcription Primary T regulatory cells fromperipheralblood blood
12 chr19:39190800-39222600 Strong transcription Primary B cells from peripheral blood blood
13 chr19:39190800-39222600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr19:39190800-39222800 Strong transcription H1 Cell Line embryonic stem cell
15 chr19:39190800-39223000 Strong transcription Primary neutrophils fromperipheralblood blood
16 chr19:39190800-39223000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr19:39191000-39222400 Strong transcription iPS-18 Cell Line embryonic stem cell
18 chr19:39191000-39222600 Strong transcription Monocytes-CD14+_RO01746 blood
19 chr19:39191400-39218800 Strong transcription ES-I3 Cell Line embryonic stem cell
20 chr19:39192400-39221200 Strong transcription Sigmoid Colon Sigmoid Colon
21 chr19:39199000-39220400 Strong transcription Rectal Mucosa Donor 31 rectum
22 chr19:39202800-39221400 Strong transcription Rectal Mucosa Donor 29 rectum
23 chr19:39203400-39218600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr19:39204200-39223400 Strong transcription H9 Cell Line embryonic stem cell
25 chr19:39205000-39221000 Strong transcription Duodenum Mucosa Duodenum
26 chr19:39206800-39220000 Strong transcription iPS-15b Cell Line embryonic stem cell
27 chr19:39206800-39220000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr19:39207000-39219400 Genic enhancers Breast Myoepithelial Primary Cells Breast
29 chr19:39207000-39220200 Strong transcription iPS DF 6.9 Cell Line embryonic stem cell
30 chr19:39207000-39222400 Strong transcription Fetal Brain Female brain
31 chr19:39210000-39218400 Strong transcription HUES6 Cell Line embryonic stem cell
32 chr19:39210200-39222600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr19:39210400-39223400 Strong transcription NHLF lung
34 chr19:39210400-39223400 Strong transcription Osteobl bone
35 chr19:39210600-39219000 Strong transcription Rectal Smooth Muscle rectum
36 chr19:39210600-39222000 Strong transcription Small Intestine intestine
37 chr19:39210600-39222800 Genic enhancers Spleen Spleen
38 chr19:39210800-39219200 Strong transcription NHEK skin
39 chr19:39210800-39220200 Strong transcription Thymus Thymus
40 chr19:39211000-39218800 Strong transcription Pancreatic Islets Pancreatic Islet
41 chr19:39211000-39220800 Strong transcription Colon Smooth Muscle Colon
42 chr19:39211200-39218600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr19:39211200-39218600 Weak transcription Fetal Brain Male brain
44 chr19:39211200-39219800 Strong transcription Fetal Lung lung
45 chr19:39211200-39220000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr19:39211200-39221400 Strong transcription Esophagus oesophagus
47 chr19:39211200-39222000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr19:39211200-39224000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr19:39211600-39219000 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr19:39211600-39219400 Strong transcription Primary T helper cells PMA-I stimulated --

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