Variant report

Variant	rs13065138
Chromosome Location	chr3:99235475-99235476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10511174	0.91[EUR][1000 genomes]
rs13063175	0.91[EUR][1000 genomes]
rs13070584	0.91[EUR][1000 genomes]
rs13084282	0.91[EUR][1000 genomes]
rs13086098	0.91[EUR][1000 genomes]
rs13088964	0.91[EUR][1000 genomes]
rs13089029	1.00[AFR][1000 genomes]
rs13098261	0.91[EUR][1000 genomes]
rs16841321	0.91[EUR][1000 genomes]
rs16841339	0.91[EUR][1000 genomes]
rs34060873	0.82[EUR][1000 genomes]
rs34162135	0.91[EUR][1000 genomes]
rs34201317	0.82[EUR][1000 genomes]
rs34468147	0.91[EUR][1000 genomes]
rs34580839	0.91[EUR][1000 genomes]
rs34686662	0.82[EUR][1000 genomes]
rs34964323	0.91[EUR][1000 genomes]
rs35069145	1.00[AFR][1000 genomes]
rs35217023	0.91[EUR][1000 genomes]
rs35479623	0.82[EUR][1000 genomes]
rs35722344	0.91[EUR][1000 genomes]
rs35787037	0.82[EUR][1000 genomes]
rs35892771	0.91[EUR][1000 genomes]
rs35981855	0.82[EUR][1000 genomes]
rs4928201	0.89[EUR][1000 genomes]
rs6765840	0.91[EUR][1000 genomes]
rs71313551	0.91[EUR][1000 genomes]
rs71313553	0.84[EUR][1000 genomes]
rs71313554	0.91[EUR][1000 genomes]
rs71313556	0.91[EUR][1000 genomes]
rs7629812	0.91[EUR][1000 genomes]
rs7630545	0.91[EUR][1000 genomes]
rs7649391	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99228400-99243000	Weak transcription	Aorta	Aorta
2	chr3:99233000-99237800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:99234200-99235600	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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