Variant report

Variant	rs13084282
Chromosome Location	chr3:99254429-99254430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10511174	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064696	0.88[EUR][1000 genomes]
rs13065138	0.91[EUR][1000 genomes]
rs13070584	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086098	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13088964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13098261	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101237	0.81[ASN][1000 genomes]
rs16841321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16841339	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342465	1.00[JPT][hapmap]
rs34060873	0.91[EUR][1000 genomes]
rs34162135	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34201317	0.91[EUR][1000 genomes]
rs34468147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34580839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34686662	0.91[EUR][1000 genomes]
rs34964323	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35217023	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35479623	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35722344	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35787037	0.91[EUR][1000 genomes]
rs35892771	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35981855	0.91[EUR][1000 genomes]
rs36015505	0.83[EUR][1000 genomes]
rs4928134	0.88[EUR][1000 genomes]
rs4928201	0.92[EUR][1000 genomes]
rs6765840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71313551	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71313553	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71313554	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71313556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7629812	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7649391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99249200-99254600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:99249200-99256000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:99251400-99256200	Weak transcription	Aorta	Aorta
5	chr3:99253200-99256000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:99253400-99256400	Enhancers	HSMM	muscle
7	chr3:99253600-99255000	Enhancers	Fetal Lung	lung
8	chr3:99253600-99255600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:99253600-99255600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:99253600-99256400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:99253600-99256400	Enhancers	NHEK	skin
12	chr3:99254000-99254600	Enhancers	HUVEC	blood vessel
13	chr3:99254000-99254800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:99254000-99255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:99254000-99255000	Enhancers	HSMMtube	muscle
16	chr3:99254000-99255000	Enhancers	NH-A	brain
17	chr3:99254000-99255200	Enhancers	HMEC	breast
18	chr3:99254000-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:99254000-99256000	Enhancers	Osteobl	bone
20	chr3:99254000-99256800	Enhancers	NHDF-Ad	bronchial
21	chr3:99254200-99254600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr3:99254200-99254800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:99254200-99255000	Enhancers	Hela-S3	cervix
24	chr3:99254200-99255600	Enhancers	NHLF	lung
25	chr3:99254200-99255800	Enhancers	Fetal Stomach	stomach
26	chr3:99254200-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:99254400-99254800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:99254400-99255200	Enhancers	Adipose Nuclei	Adipose
29	chr3:99254400-99256600	Enhancers	Muscle Satellite Cultured Cells	--

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