Variant report

Variant	rs35722344
Chromosome Location	chr3:99225096-99225097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511174	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13063175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13064696	0.88[EUR][1000 genomes]
rs13065138	0.91[EUR][1000 genomes]
rs13070584	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13084282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13086098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098261	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13101237	0.91[ASN][1000 genomes]
rs16841321	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16841339	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2342465	0.86[ASN][1000 genomes]
rs34060873	0.91[EUR][1000 genomes]
rs34162135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34201317	0.91[EUR][1000 genomes]
rs34468147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580839	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34686662	0.91[EUR][1000 genomes]
rs34964323	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35217023	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35479623	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35787037	0.91[EUR][1000 genomes]
rs35892771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35981855	0.91[EUR][1000 genomes]
rs36015505	0.83[EUR][1000 genomes]
rs4928134	0.88[EUR][1000 genomes]
rs4928201	0.92[EUR][1000 genomes]
rs6765840	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71313550	0.86[ASN][1000 genomes]
rs71313551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313553	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71313554	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313556	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7629812	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630545	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7649391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99218800-99226200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99220000-99227000	Weak transcription	Aorta	Aorta
3	chr3:99220400-99226600	Weak transcription	Right Atrium	heart
4	chr3:99221600-99225200	Enhancers	Osteobl	bone
5	chr3:99221600-99225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:99221600-99225400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:99222600-99227000	Weak transcription	Left Ventricle	heart
8	chr3:99223800-99226600	Weak transcription	Ovary	ovary
9	chr3:99224000-99225400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:99224600-99225200	Enhancers	NHEK	skin
11	chr3:99224800-99227600	Weak transcription	NHLF	lung
12	chr3:99224800-99228000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:99225000-99226000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:99225000-99226200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:99225000-99226200	Weak transcription	Adipose Nuclei	Adipose
16	chr3:99225000-99226200	Weak transcription	NHDF-Ad	bronchial
17	chr3:99225000-99226600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:99225000-99226600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:99225000-99227000	Weak transcription	HSMM	muscle
20	chr3:99225000-99227200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99225000-99227200	Weak transcription	NH-A	brain

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