Variant report

Variant	rs16841321
Chromosome Location	chr3:99254954-99254955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10511174	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13063175	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13064696	0.88[EUR][1000 genomes]
rs13065138	0.91[EUR][1000 genomes]
rs13070584	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13084282	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086098	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13088964	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13098261	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16841339	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34060873	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34162135	1.00[EUR][1000 genomes]
rs34201317	0.91[EUR][1000 genomes]
rs34468147	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34580839	1.00[EUR][1000 genomes]
rs34686662	0.91[EUR][1000 genomes]
rs34964323	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35217023	1.00[EUR][1000 genomes]
rs35479623	0.91[EUR][1000 genomes]
rs35722344	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35787037	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35892771	1.00[EUR][1000 genomes]
rs35981855	0.91[EUR][1000 genomes]
rs36015505	0.83[EUR][1000 genomes]
rs4928134	0.88[EUR][1000 genomes]
rs4928201	0.92[EUR][1000 genomes]
rs6765840	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71313551	1.00[EUR][1000 genomes]
rs71313553	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71313554	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71313556	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629812	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7630545	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649391	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99249200-99256000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:99251400-99256200	Weak transcription	Aorta	Aorta
4	chr3:99253200-99256000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99253400-99256400	Enhancers	HSMM	muscle
6	chr3:99253600-99255000	Enhancers	Fetal Lung	lung
7	chr3:99253600-99255600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99253600-99255600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:99253600-99256400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:99253600-99256400	Enhancers	NHEK	skin
11	chr3:99254000-99255000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:99254000-99255000	Enhancers	HSMMtube	muscle
13	chr3:99254000-99255000	Enhancers	NH-A	brain
14	chr3:99254000-99255200	Enhancers	HMEC	breast
15	chr3:99254000-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:99254000-99256000	Enhancers	Osteobl	bone
17	chr3:99254000-99256800	Enhancers	NHDF-Ad	bronchial
18	chr3:99254200-99255000	Enhancers	Hela-S3	cervix
19	chr3:99254200-99255600	Enhancers	NHLF	lung
20	chr3:99254200-99255800	Enhancers	Fetal Stomach	stomach
21	chr3:99254200-99256000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:99254400-99255200	Enhancers	Adipose Nuclei	Adipose
23	chr3:99254400-99256600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:99254600-99255600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:99254600-99256000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:99254800-99256400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:99254800-99258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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