Variant report

Variant	rs4928201
Chromosome Location	chr3:99267981-99267982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10511174	0.92[EUR][1000 genomes]
rs13063175	0.92[EUR][1000 genomes]
rs13064696	0.81[EUR][1000 genomes]
rs13065138	0.89[EUR][1000 genomes]
rs13070584	0.97[EUR][1000 genomes]
rs13084282	0.92[EUR][1000 genomes]
rs13086098	0.92[EUR][1000 genomes]
rs13088964	0.92[EUR][1000 genomes]
rs13098261	0.97[EUR][1000 genomes]
rs16841321	0.92[EUR][1000 genomes]
rs16841339	0.92[EUR][1000 genomes]
rs34060873	0.83[EUR][1000 genomes]
rs34162135	0.92[EUR][1000 genomes]
rs34201317	0.83[EUR][1000 genomes]
rs34468147	0.92[EUR][1000 genomes]
rs34580839	0.92[EUR][1000 genomes]
rs34686662	0.83[EUR][1000 genomes]
rs34964323	0.92[EUR][1000 genomes]
rs35217023	0.92[EUR][1000 genomes]
rs35479623	0.83[EUR][1000 genomes]
rs35722344	0.92[EUR][1000 genomes]
rs35787037	0.83[EUR][1000 genomes]
rs35892771	0.92[EUR][1000 genomes]
rs35981855	0.83[EUR][1000 genomes]
rs4928134	0.86[EUR][1000 genomes]
rs6765840	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs71313551	0.92[EUR][1000 genomes]
rs71313553	0.84[EUR][1000 genomes]
rs71313554	0.92[EUR][1000 genomes]
rs71313556	0.92[EUR][1000 genomes]
rs7629812	0.92[EUR][1000 genomes]
rs7630545	0.92[EUR][1000 genomes]
rs7649391	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99264800-99268600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99265000-99269400	Enhancers	Adipose Nuclei	Adipose
3	chr3:99265400-99268600	Weak transcription	NHDF-Ad	bronchial
4	chr3:99265400-99269800	Enhancers	HUVEC	blood vessel
5	chr3:99265600-99268800	Weak transcription	HSMM	muscle
6	chr3:99266400-99269800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:99267000-99269600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:99267000-99269800	Enhancers	NHEK	skin
9	chr3:99267000-99270000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:99267200-99269200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:99267200-99269800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:99267400-99268200	Enhancers	Colon Smooth Muscle	Colon
13	chr3:99267600-99268800	Weak transcription	HSMMtube	muscle
14	chr3:99267800-99268800	Weak transcription	HMEC	breast
15	chr3:99267800-99268800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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