Variant report

Variant	rs7629812
Chromosome Location	chr3:99224584-99224585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511174	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13063175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13064696	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13065138	0.91[EUR][1000 genomes]
rs13070584	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13084282	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13086098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088964	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13098261	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13101237	0.91[ASN][1000 genomes]
rs16841321	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16841339	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2342465	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs34060873	0.91[EUR][1000 genomes]
rs34162135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34201317	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34468147	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34686662	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34964323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35217023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35479623	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35722344	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35787037	0.91[EUR][1000 genomes]
rs35892771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35981855	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs36015505	0.83[EUR][1000 genomes]
rs4928134	0.88[EUR][1000 genomes]
rs4928201	0.92[EUR][1000 genomes]
rs6765840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71313550	0.86[ASN][1000 genomes]
rs71313551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313553	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71313554	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71313556	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7630545	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7649391	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99218800-99226200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99219800-99224600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:99219800-99224800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:99219800-99225000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:99220000-99227000	Weak transcription	Aorta	Aorta
6	chr3:99220400-99226600	Weak transcription	Right Atrium	heart
7	chr3:99221200-99225000	Enhancers	Adipose Nuclei	Adipose
8	chr3:99221600-99225000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:99221600-99225000	Enhancers	NHDF-Ad	bronchial
10	chr3:99221600-99225200	Enhancers	Osteobl	bone
11	chr3:99221600-99225400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99221600-99225400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:99221800-99224800	Enhancers	NHLF	lung
14	chr3:99221800-99225000	Enhancers	HSMM	muscle
15	chr3:99222000-99225000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:99222000-99225000	Enhancers	NH-A	brain
17	chr3:99222600-99224600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:99222600-99224600	Weak transcription	NHEK	skin
19	chr3:99222600-99227000	Weak transcription	Left Ventricle	heart
20	chr3:99223000-99225000	Enhancers	HSMMtube	muscle
21	chr3:99223800-99226600	Weak transcription	Ovary	ovary
22	chr3:99224000-99224800	Enhancers	GM12878-XiMat	blood
23	chr3:99224000-99225400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:99224200-99225000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr3:99224400-99225000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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