Variant report

Variant	rs34201317
Chromosome Location	chr3:99192589-99192590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10511174	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13063175	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13064696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13065138	0.82[EUR][1000 genomes]
rs13070584	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13084282	0.91[EUR][1000 genomes]
rs13086098	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13088964	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13098261	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16841321	0.91[EUR][1000 genomes]
rs16841339	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34060873	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34162135	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34468147	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34580839	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34686662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34964323	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35217023	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35479623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35722344	0.91[EUR][1000 genomes]
rs35787037	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35892771	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35981855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36015505	0.91[EUR][1000 genomes]
rs4928134	0.97[EUR][1000 genomes]
rs4928201	0.83[EUR][1000 genomes]
rs6765840	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71313551	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71313553	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71313554	0.91[EUR][1000 genomes]
rs71313556	0.91[EUR][1000 genomes]
rs7629812	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7630545	0.91[EUR][1000 genomes]
rs7649391	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99189200-99194600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:99190600-99193200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:99190800-99194000	Enhancers	HSMM	muscle
4	chr3:99191400-99192800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:99191400-99192800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:99191800-99192600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:99191800-99192600	Flanking Active TSS	NHDF-Ad	bronchial
8	chr3:99192000-99192600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:99192000-99192600	Flanking Active TSS	Osteobl	bone
10	chr3:99192200-99192600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr3:99192200-99193400	Weak transcription	NHLF	lung
12	chr3:99192400-99192600	Flanking Active TSS	HSMMtube	muscle

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