Variant report

Variant	rs7630545
Chromosome Location	chr3:99258299-99258300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10511174	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13063175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13064696	0.88[EUR][1000 genomes]
rs13065138	0.91[EUR][1000 genomes]
rs13070584	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13084282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086098	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13088964	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13098261	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16841321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841339	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34060873	0.91[EUR][1000 genomes]
rs34162135	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34201317	0.91[EUR][1000 genomes]
rs34468147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34580839	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34686662	0.91[EUR][1000 genomes]
rs34964323	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35217023	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35479623	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35722344	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35787037	0.91[EUR][1000 genomes]
rs35892771	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35981855	0.91[EUR][1000 genomes]
rs36015505	0.83[EUR][1000 genomes]
rs4928134	0.88[EUR][1000 genomes]
rs4928201	0.92[EUR][1000 genomes]
rs6765840	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71313551	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71313553	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71313554	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71313556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629812	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7649391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99254800-99258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99255200-99261400	Weak transcription	HMEC	breast
4	chr3:99255600-99262000	Weak transcription	NHLF	lung
5	chr3:99256000-99260200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99256000-99261200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:99256400-99261800	Weak transcription	Placenta	Placenta
8	chr3:99256600-99261400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:99256600-99261800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:99256600-99261800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:99256600-99261800	Weak transcription	Adipose Nuclei	Adipose
12	chr3:99256600-99263800	Weak transcription	Aorta	Aorta
13	chr3:99256800-99261800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:99256800-99261800	Weak transcription	Osteobl	bone
15	chr3:99256800-99262000	Weak transcription	NHDF-Ad	bronchial

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