Variant report

Variant	rs1319777
Chromosome Location	chr9:92694356-92694357
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92691934..92694632-chr9:92847404..92848934,2	MCF-7	breast:
2	chr9:92694323..92695967-chr9:92696757..92699366,2	MCF-7	breast:
3	chr9:92693505..92695699-chr9:92701901..92704107,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10820884	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10820923	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821065	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821308	0.96[EUR][1000 genomes]
rs10821358	0.89[EUR][1000 genomes]
rs10821381	0.89[EUR][1000 genomes]
rs10992209	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992637	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993051	0.95[EUR][1000 genomes]
rs10993105	0.96[EUR][1000 genomes]
rs10993510	0.84[EUR][1000 genomes]
rs1155647	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561949	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561950	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866766	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196921	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2196923	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2379196	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7025971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036596	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7466044	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7861478	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92689800-92697000	Weak transcription	Gastric	stomach
2	chr9:92689800-92697800	Weak transcription	Brain Angular Gyrus	brain
3	chr9:92690000-92697400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:92690800-92695400	Weak transcription	Liver	Liver
5	chr9:92690800-92695600	Weak transcription	Ovary	ovary
6	chr9:92692800-92694600	Weak transcription	Fetal Intestine Small	intestine
7	chr9:92692800-92695400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:92692800-92697600	Weak transcription	Psoas Muscle	Psoas
9	chr9:92693000-92695800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:92693000-92697000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:92693200-92696600	Weak transcription	Lung	lung
12	chr9:92693200-92697400	Weak transcription	Brain Anterior Caudate	brain
13	chr9:92693200-92697600	Weak transcription	Brain Substantia Nigra	brain
14	chr9:92693200-92698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:92693400-92695400	Weak transcription	Adipose Nuclei	Adipose
17	chr9:92693400-92695600	Weak transcription	Right Atrium	heart
18	chr9:92693600-92703000	Weak transcription	NHDF-Ad	bronchial
19	chr9:92694200-92694400	Enhancers	Fetal Kidney	kidney

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