Variant report

Variant	rs7025971
Chromosome Location	chr9:92693881-92693882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92691934..92694632-chr9:92847404..92848934,2	MCF-7	breast:
2	chr9:92218809..92222310-chr9:92690732..92694174,4	MCF-7	breast:
3	chr9:92693505..92695699-chr9:92701901..92704107,2	MCF-7	breast:
4	chr9:92686545..92689268-chr9:92692416..92694064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10820845	0.82[YRI][hapmap]
rs10820848	0.81[ASW][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10820884	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820923	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821065	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821308	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821358	0.89[EUR][1000 genomes]
rs10821381	0.89[EUR][1000 genomes]
rs10992155	0.80[ASW][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap]
rs10992209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992363	0.82[MKK][hapmap]
rs10992637	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993051	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10993105	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10993510	0.83[EUR][1000 genomes]
rs1155647	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1319777	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1561949	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1561950	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866766	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2043963	0.81[ASW][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs2196921	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2196923	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2379196	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036596	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7466044	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7861478	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7862411	0.89[YRI][hapmap];0.94[AFR][1000 genomes]
rs7864499	0.81[YRI][hapmap]
rs7875030	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7025971	NFIL3	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92689200-92694000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:92689800-92697000	Weak transcription	Gastric	stomach
3	chr9:92689800-92697800	Weak transcription	Brain Angular Gyrus	brain
4	chr9:92690000-92697400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:92690800-92695400	Weak transcription	Liver	Liver
6	chr9:92690800-92695600	Weak transcription	Ovary	ovary
7	chr9:92691600-92694000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:92692600-92694000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:92692800-92694600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:92692800-92695400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:92692800-92697600	Weak transcription	Psoas Muscle	Psoas
12	chr9:92693000-92695800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:92693000-92697000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:92693200-92696600	Weak transcription	Lung	lung
15	chr9:92693200-92697400	Weak transcription	Brain Anterior Caudate	brain
16	chr9:92693200-92697600	Weak transcription	Brain Substantia Nigra	brain
17	chr9:92693200-92698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:92693400-92694200	Weak transcription	Fetal Kidney	kidney
20	chr9:92693400-92695400	Weak transcription	Adipose Nuclei	Adipose
21	chr9:92693400-92695600	Weak transcription	Right Atrium	heart
22	chr9:92693600-92703000	Weak transcription	NHDF-Ad	bronchial

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