Variant report

Variant	rs10820845
Chromosome Location	chr9:92693210-92693211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92687750..92690637-chr9:92691262..92693318,3	MCF-7	breast:
2	chr9:92691934..92694632-chr9:92847404..92848934,2	MCF-7	breast:
3	chr9:92218809..92222310-chr9:92690732..92694174,4	MCF-7	breast:
4	chr9:92691647..92693844-chr9:92695816..92697738,2	MCF-7	breast:
5	chr9:92686545..92689268-chr9:92692416..92694064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10465161	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10465162	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761114	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10761354	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10820846	0.81[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10820848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821337	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821382	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10821386	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10821408	0.82[EUR][1000 genomes]
rs10821442	0.82[EUR][1000 genomes]
rs10992155	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992363	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993136	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993138	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993172	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993173	0.82[EUR][1000 genomes]
rs10993174	0.83[EUR][1000 genomes]
rs10993230	0.82[EUR][1000 genomes]
rs10993257	0.82[EUR][1000 genomes]
rs10993327	0.82[EUR][1000 genomes]
rs10993330	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993331	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993333	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993342	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993419	0.82[EUR][1000 genomes]
rs10993433	0.82[EUR][1000 genomes]
rs10993434	0.82[EUR][1000 genomes]
rs10993454	0.82[EUR][1000 genomes]
rs10993459	0.82[EUR][1000 genomes]
rs10993476	0.82[EUR][1000 genomes]
rs1155647	0.83[AFR][1000 genomes]
rs16905994	0.82[EUR][1000 genomes]
rs1866766	0.85[AFR][1000 genomes]
rs1992544	0.82[EUR][1000 genomes]
rs2043963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119295	0.82[EUR][1000 genomes]
rs2119296	0.82[EUR][1000 genomes]
rs2149594	0.80[EUR][1000 genomes]
rs2196922	0.83[ASN][1000 genomes]
rs4142062	0.81[EUR][1000 genomes]
rs58259287	0.82[EUR][1000 genomes]
rs58691804	0.82[EUR][1000 genomes]
rs7025971	0.82[YRI][hapmap]
rs7036596	0.83[AFR][1000 genomes]
rs7047355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714360	0.82[EUR][1000 genomes]
rs721830	0.83[EUR][1000 genomes]
rs721831	0.82[EUR][1000 genomes]
rs749194	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7848827	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858942	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861891	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863076	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7863792	0.82[EUR][1000 genomes]
rs7864499	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7875030	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92689200-92693400	Enhancers	Fetal Muscle Leg	muscle
2	chr9:92689200-92694000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:92689800-92697000	Weak transcription	Gastric	stomach
4	chr9:92689800-92697800	Weak transcription	Brain Angular Gyrus	brain
5	chr9:92690000-92697400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:92690800-92695400	Weak transcription	Liver	Liver
7	chr9:92690800-92695600	Weak transcription	Ovary	ovary
8	chr9:92691000-92693400	Enhancers	Fetal Thymus	thymus
9	chr9:92691200-92693400	Enhancers	Fetal Kidney	kidney
10	chr9:92691200-92693800	Enhancers	Primary T cells from cord blood	blood
11	chr9:92691200-92693800	Enhancers	Primary hematopoietic stem cells	blood
12	chr9:92691400-92693600	Enhancers	Placenta	Placenta
13	chr9:92691400-92693800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:92691600-92693400	Enhancers	Adipose Nuclei	Adipose
15	chr9:92691600-92693400	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:92691600-92693400	Enhancers	Right Atrium	heart
17	chr9:92691600-92694000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:92692600-92694000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:92692800-92694600	Weak transcription	Fetal Intestine Small	intestine
20	chr9:92692800-92695400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:92692800-92697600	Weak transcription	Psoas Muscle	Psoas
22	chr9:92693000-92693600	Enhancers	NHDF-Ad	bronchial
23	chr9:92693000-92695800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:92693000-92697000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:92693200-92693600	Bivalent Enhancer	Fetal Stomach	stomach
26	chr9:92693200-92696600	Weak transcription	Lung	lung
27	chr9:92693200-92697400	Weak transcription	Brain Anterior Caudate	brain
28	chr9:92693200-92697600	Weak transcription	Brain Substantia Nigra	brain
29	chr9:92693200-92698200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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