Variant report

Variant	rs10993257
Chromosome Location	chr9:92725660-92725661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92722728..92724376-chr9:92724584..92726100,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10117261	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10465161	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10465162	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10761354	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761357	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10820845	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10820848	0.89[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs10821337	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821358	0.97[AFR][1000 genomes]
rs10821381	0.93[AFR][1000 genomes]
rs10821382	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821408	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821468	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821475	0.83[CHB][hapmap]
rs10992155	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10992363	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10993136	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993138	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993172	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10993173	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10993174	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10993230	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993330	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993331	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993334	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993342	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993419	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993434	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16905994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2043963	0.89[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs2119295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119296	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149594	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4142062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58259287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58691804	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047355	0.82[EUR][1000 genomes]
rs714360	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721830	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721831	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs749194	0.94[EUR][1000 genomes]
rs7848827	0.81[EUR][1000 genomes]
rs7858942	0.81[EUR][1000 genomes]
rs7861891	0.81[EUR][1000 genomes]
rs7862411	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7863792	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864499	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7875030	0.88[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424181	chr9:92723632-92727930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92723400-92725800	Enhancers	Spleen	Spleen
2	chr9:92723600-92726000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr9:92723600-92727800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:92724000-92727400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:92724200-92725800	Enhancers	Primary B cells from cord blood	blood
6	chr9:92724400-92727000	Weak transcription	Right Atrium	heart
7	chr9:92724800-92726200	Weak transcription	Liver	Liver
8	chr9:92724800-92729800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:92724800-92732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:92725000-92726000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:92725000-92726800	Weak transcription	NHDF-Ad	bronchial
12	chr9:92725000-92727600	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:92725000-92729600	Weak transcription	Fetal Intestine Small	intestine
14	chr9:92725200-92726800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:92725400-92731000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:92725600-92738200	Weak transcription	Lung	lung

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