Variant report

Variant	rs749194
Chromosome Location	chr9:92717228-92717229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92712626..92715302-chr9:92716416..92719333,3	MCF-7	breast:
2	chr9:92706967..92708489-chr9:92716567..92719415,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10465161	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10465162	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10761114	0.86[CHB][hapmap]
rs10761354	0.95[CEU][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs10820845	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10820846	0.84[CHD][hapmap]
rs10820848	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821337	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821382	0.95[CEU][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs10821386	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs10821408	0.94[EUR][1000 genomes]
rs10821442	0.94[EUR][1000 genomes]
rs10821468	0.85[EUR][1000 genomes]
rs10992155	0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992363	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992637	0.82[AFR][1000 genomes]
rs10993136	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993138	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993172	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993173	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993174	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993230	0.94[EUR][1000 genomes]
rs10993257	0.94[EUR][1000 genomes]
rs10993327	0.94[EUR][1000 genomes]
rs10993330	0.95[CEU][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs10993331	0.95[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs10993333	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs10993334	0.86[EUR][1000 genomes]
rs10993342	0.94[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs10993419	0.94[EUR][1000 genomes]
rs10993433	0.94[EUR][1000 genomes]
rs10993434	0.94[EUR][1000 genomes]
rs10993454	0.94[EUR][1000 genomes]
rs10993459	0.94[EUR][1000 genomes]
rs10993476	0.94[EUR][1000 genomes]
rs16905994	0.94[EUR][1000 genomes]
rs1992544	0.94[EUR][1000 genomes]
rs2043963	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2119295	0.94[EUR][1000 genomes]
rs2119296	0.94[EUR][1000 genomes]
rs2149594	0.92[EUR][1000 genomes]
rs2196922	0.85[ASN][1000 genomes]
rs4142062	0.93[EUR][1000 genomes]
rs58259287	0.94[EUR][1000 genomes]
rs58691804	0.94[EUR][1000 genomes]
rs7047355	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs714360	0.94[EUR][1000 genomes]
rs721830	0.95[EUR][1000 genomes]
rs721831	0.94[EUR][1000 genomes]
rs7848827	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7858942	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7861478	0.81[AFR][1000 genomes]
rs7861891	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7862411	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863076	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7863792	0.94[EUR][1000 genomes]
rs7864499	0.81[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7875030	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92705600-92719200	Weak transcription	Ovary	ovary
2	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
3	chr9:92713600-92718400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:92714200-92718400	Enhancers	Fetal Stomach	stomach
5	chr9:92716000-92717600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:92716200-92717400	Enhancers	Fetal Brain Female	brain
7	chr9:92716200-92717600	Enhancers	Gastric	stomach
8	chr9:92716200-92718000	Enhancers	Adipose Nuclei	Adipose
9	chr9:92716400-92720400	Weak transcription	NHDF-Ad	bronchial
10	chr9:92716600-92718000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:92716600-92718200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:92716800-92717400	Enhancers	Brain Germinal Matrix	brain
13	chr9:92716800-92717600	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:92716800-92719000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:92716800-92723200	Weak transcription	Pancreas	Pancrea
16	chr9:92716800-92724000	Weak transcription	Esophagus	oesophagus
17	chr9:92717000-92717400	Weak transcription	Psoas Muscle	Psoas
18	chr9:92717000-92724200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:92717200-92718200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr9:92717200-92719200	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:92717200-92719200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:92717200-92719200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:92717200-92719400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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