Variant report

Variant	rs7863076
Chromosome Location	chr9:92689363-92689364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92687092..92689404-chr9:92701251..92704588,3	MCF-7	breast:
2	chr9:92687750..92690637-chr9:92691262..92693318,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10761114	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10820845	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10820846	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10820848	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992155	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992363	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1155647	0.81[AFR][1000 genomes]
rs1866766	0.84[AFR][1000 genomes]
rs2043963	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7025971	0.85[YRI][hapmap]
rs7036596	0.81[AFR][1000 genomes]
rs7047355	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs749194	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7848827	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7858942	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7861891	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7862411	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7864499	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7875030	0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92681600-92691600	Weak transcription	Right Atrium	heart
2	chr9:92685000-92690800	Enhancers	Liver	Liver
3	chr9:92685000-92691200	Weak transcription	Spleen	Spleen
4	chr9:92686200-92689800	Enhancers	Pancreas	Pancrea
5	chr9:92686400-92689600	Weak transcription	Fetal Kidney	kidney
6	chr9:92686600-92691000	Weak transcription	Fetal Thymus	thymus
7	chr9:92686600-92691200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:92686600-92691400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:92687000-92691400	Weak transcription	Placenta	Placenta
10	chr9:92687800-92689400	Weak transcription	Brain Angular Gyrus	brain
11	chr9:92688000-92690600	Weak transcription	Psoas Muscle	Psoas
12	chr9:92688600-92689800	Enhancers	Fetal Brain Female	brain
13	chr9:92688600-92689800	Enhancers	Fetal Stomach	stomach
14	chr9:92688600-92690000	Enhancers	Fetal Brain Male	brain
15	chr9:92688600-92690000	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:92689000-92689400	Enhancers	Stomach Mucosa	stomach
17	chr9:92689000-92689600	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr9:92689000-92690000	Enhancers	Left Ventricle	heart
19	chr9:92689000-92690000	Enhancers	Ovary	ovary
20	chr9:92689000-92693000	Enhancers	Right Ventricle	heart
21	chr9:92689200-92689600	Enhancers	Primary T cells from cord blood	blood
22	chr9:92689200-92689600	Enhancers	Fetal Intestine Large	intestine
23	chr9:92689200-92689600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr9:92689200-92689600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr9:92689200-92689800	Enhancers	Fetal Intestine Small	intestine
26	chr9:92689200-92689800	Enhancers	Gastric	stomach
27	chr9:92689200-92690000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr9:92689200-92690000	Enhancers	Colon Smooth Muscle	Colon
29	chr9:92689200-92690000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:92689200-92690000	Enhancers	Esophagus	oesophagus
31	chr9:92689200-92690200	Enhancers	Fetal Lung	lung
32	chr9:92689200-92690600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:92689200-92691200	Weak transcription	Fetal Heart	heart
34	chr9:92689200-92691600	Enhancers	Lung	lung
35	chr9:92689200-92692400	Enhancers	NHDF-Ad	bronchial
36	chr9:92689200-92693000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr9:92689200-92693200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr9:92689200-92693400	Enhancers	Fetal Muscle Leg	muscle
39	chr9:92689200-92694000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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