Variant report

Variant	rs7848827
Chromosome Location	chr9:92701610-92701611
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92682411..92684734-chr9:92700082..92701810,2	MCF-7	breast:
2	chr9:92687092..92689404-chr9:92701251..92704588,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10465161	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10465162	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761114	0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs10761354	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10820845	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820846	0.81[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs10820848	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821337	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821382	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10821386	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10821408	0.81[EUR][1000 genomes]
rs10821442	0.81[EUR][1000 genomes]
rs10992155	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993136	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993138	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993172	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993173	0.81[EUR][1000 genomes]
rs10993174	0.82[EUR][1000 genomes]
rs10993230	0.81[EUR][1000 genomes]
rs10993257	0.81[EUR][1000 genomes]
rs10993327	0.81[EUR][1000 genomes]
rs10993330	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10993331	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993333	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10993342	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993419	0.81[EUR][1000 genomes]
rs10993433	0.81[EUR][1000 genomes]
rs10993434	0.81[EUR][1000 genomes]
rs10993454	0.81[EUR][1000 genomes]
rs10993459	0.81[EUR][1000 genomes]
rs10993476	0.81[EUR][1000 genomes]
rs16905994	0.81[EUR][1000 genomes]
rs1866766	0.88[AFR][1000 genomes]
rs1992544	0.81[EUR][1000 genomes]
rs2043963	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119295	0.81[EUR][1000 genomes]
rs2119296	0.81[EUR][1000 genomes]
rs2196922	0.83[ASN][1000 genomes]
rs4142062	0.81[EUR][1000 genomes]
rs58259287	0.81[EUR][1000 genomes]
rs58691804	0.81[EUR][1000 genomes]
rs7047355	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714360	0.81[EUR][1000 genomes]
rs721830	0.82[EUR][1000 genomes]
rs721831	0.81[EUR][1000 genomes]
rs749194	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7858942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862411	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863076	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7863792	0.81[EUR][1000 genomes]
rs7864499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7875030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:92693600-92703000	Weak transcription	NHDF-Ad	bronchial
3	chr9:92695800-92703800	Weak transcription	Aorta	Aorta
4	chr9:92698200-92701800	Weak transcription	Ovary	ovary
5	chr9:92698200-92704400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:92698400-92703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:92698400-92703800	Weak transcription	Psoas Muscle	Psoas
8	chr9:92698800-92703000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:92698800-92703800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:92698800-92703800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:92698800-92704000	Weak transcription	Right Atrium	heart
12	chr9:92701000-92702600	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:92701200-92702800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:92701400-92702200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:92701400-92702600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:92701400-92704600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:92701600-92702000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr9:92701600-92702400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:92701600-92704800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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