Variant report

Variant	rs10993230
Chromosome Location	chr9:92724944-92724945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92710212..92712786-chr9:92722735..92725255,2	MCF-7	breast:
2	chr9:92722728..92724376-chr9:92724584..92726100,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10117261	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10465161	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10465162	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10761354	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761357	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10820845	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10820848	0.89[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs10821337	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10821358	0.88[AFR][1000 genomes]
rs10821381	0.85[AFR][1000 genomes]
rs10821382	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821468	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821475	0.83[CHB][hapmap]
rs10992155	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10992363	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10993136	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993138	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10993172	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10993173	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10993174	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10993257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993327	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993330	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993331	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993334	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993342	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993419	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993433	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993434	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993476	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16905994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992544	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2043963	0.89[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs2119295	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119296	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149594	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4142062	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58259287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58691804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047355	0.82[EUR][1000 genomes]
rs714360	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721830	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721831	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs749194	0.94[EUR][1000 genomes]
rs7848827	0.81[EUR][1000 genomes]
rs7858942	0.81[EUR][1000 genomes]
rs7861891	0.81[EUR][1000 genomes]
rs7862411	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7863792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7864499	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7875030	0.88[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424181	chr9:92723632-92727930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92722600-92725400	Enhancers	Fetal Muscle Leg	muscle
2	chr9:92723400-92725000	Enhancers	Fetal Intestine Small	intestine
3	chr9:92723400-92725200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:92723400-92725600	Enhancers	Lung	lung
5	chr9:92723400-92725800	Enhancers	Spleen	Spleen
6	chr9:92723600-92725000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr9:92723600-92725000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr9:92723600-92725200	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:92723600-92726000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr9:92723600-92727800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:92723800-92725000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:92723800-92725000	Enhancers	Fetal Thymus	thymus
13	chr9:92723800-92725000	Enhancers	Small Intestine	intestine
14	chr9:92723800-92725200	Enhancers	Fetal Lung	lung
15	chr9:92724000-92725000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:92724000-92725000	Enhancers	Primary B cells from peripheral blood	blood
17	chr9:92724000-92725000	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr9:92724000-92725600	Enhancers	Esophagus	oesophagus
19	chr9:92724000-92725600	Enhancers	Placenta	Placenta
20	chr9:92724000-92727400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr9:92724200-92725000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:92724200-92725800	Enhancers	Primary B cells from cord blood	blood
23	chr9:92724400-92725000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr9:92724400-92725400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:92724400-92727000	Weak transcription	Right Atrium	heart
26	chr9:92724600-92725000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:92724600-92725000	Enhancers	Primary T cells from cord blood	blood
28	chr9:92724600-92725000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:92724600-92725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:92724600-92725000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:92724600-92725000	Enhancers	Colon Smooth Muscle	Colon
32	chr9:92724600-92725000	Enhancers	Ovary	ovary
33	chr9:92724600-92725000	Enhancers	Osteobl	bone
34	chr9:92724600-92725200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr9:92724600-92725200	Enhancers	HSMMtube	muscle
36	chr9:92724600-92725400	Enhancers	Adipose Nuclei	Adipose
37	chr9:92724800-92725000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr9:92724800-92725000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:92724800-92725000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr9:92724800-92725000	Enhancers	Dnd41	blood
41	chr9:92724800-92725000	Enhancers	NHDF-Ad	bronchial
42	chr9:92724800-92725200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:92724800-92725200	Enhancers	Colonic Mucosa	Colon
44	chr9:92724800-92725200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr9:92724800-92725200	Enhancers	HSMM	muscle
46	chr9:92724800-92726200	Weak transcription	Liver	Liver
47	chr9:92724800-92729800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:92724800-92732400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links