Variant report

Variant	rs7864499
Chromosome Location	chr9:92704968-92704969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92696162..92698839-chr9:92703402..92705829,2	MCF-7	breast:
2	chr9:92218435..92219998-chr9:92703276..92705546,2	MCF-7	breast:
3	chr9:92699147..92701279-chr9:92703484..92705697,2	K562	blood:
4	chr1:216119789..216122562-chr9:92704177..92706793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10465161	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10465162	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10761114	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10761354	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10820845	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10820846	0.82[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10820848	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821337	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821382	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10821386	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10821408	0.82[EUR][1000 genomes]
rs10821442	0.82[EUR][1000 genomes]
rs10992155	0.86[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992363	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993136	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993138	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10993172	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993173	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993174	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993230	0.82[EUR][1000 genomes]
rs10993257	0.82[EUR][1000 genomes]
rs10993327	0.82[EUR][1000 genomes]
rs10993330	0.89[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10993331	0.89[CEU][hapmap];0.80[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10993333	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs10993342	0.88[CEU][hapmap];0.80[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs10993419	0.82[EUR][1000 genomes]
rs10993433	0.82[EUR][1000 genomes]
rs10993434	0.82[EUR][1000 genomes]
rs10993454	0.82[EUR][1000 genomes]
rs10993459	0.82[EUR][1000 genomes]
rs10993476	0.82[EUR][1000 genomes]
rs16905994	0.82[EUR][1000 genomes]
rs1866766	0.82[AFR][1000 genomes]
rs1992544	0.82[EUR][1000 genomes]
rs2043963	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119295	0.82[EUR][1000 genomes]
rs2119296	0.82[EUR][1000 genomes]
rs2149594	0.81[EUR][1000 genomes]
rs2196922	0.84[ASN][1000 genomes]
rs4142062	0.82[EUR][1000 genomes]
rs58259287	0.82[EUR][1000 genomes]
rs58691804	0.82[EUR][1000 genomes]
rs7025971	0.81[YRI][hapmap]
rs7047355	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs714360	0.82[EUR][1000 genomes]
rs721830	0.83[EUR][1000 genomes]
rs721831	0.82[EUR][1000 genomes]
rs749194	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7848827	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7858942	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7861891	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7862411	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7863076	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7863792	0.82[EUR][1000 genomes]
rs7875030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92701800-92705600	Enhancers	Ovary	ovary
2	chr9:92702200-92705200	Enhancers	Placenta	Placenta
3	chr9:92702800-92705000	Enhancers	Fetal Heart	heart
4	chr9:92703000-92705000	Enhancers	Left Ventricle	heart
5	chr9:92703000-92706000	Enhancers	HSMM	muscle
6	chr9:92703000-92706200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:92703000-92706400	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:92703000-92707000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:92703200-92705000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:92703200-92705000	Enhancers	NH-A	brain
11	chr9:92703200-92705200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:92703200-92706000	Enhancers	HSMMtube	muscle
13	chr9:92703600-92705000	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:92703800-92705600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr9:92703800-92705600	Enhancers	Placenta Amnion	Placenta Amnion
16	chr9:92703800-92705800	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr9:92703800-92707000	Enhancers	Psoas Muscle	Psoas
18	chr9:92703800-92709800	Enhancers	Colon Smooth Muscle	Colon
19	chr9:92704400-92705600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr9:92704400-92708800	Weak transcription	Brain Germinal Matrix	brain
21	chr9:92704600-92705000	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr9:92704600-92706000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:92704800-92705600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:92704800-92705600	Weak transcription	Pancreas	Pancrea
25	chr9:92704800-92706200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr9:92704800-92707000	Bivalent Enhancer	Fetal Stomach	stomach
27	chr9:92704800-92708600	Weak transcription	NHDF-Ad	bronchial

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