Variant report

Variant	rs10992155
Chromosome Location	chr9:92698716-92698717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92218553..92221280-chr9:92698094..92699991,2	MCF-7	breast:
2	chr9:92696162..92698839-chr9:92703402..92705829,2	MCF-7	breast:
3	chr9:92694323..92695967-chr9:92696757..92699366,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10465161	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10465162	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10761114	0.85[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10761354	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10820845	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820846	0.86[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10820848	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821337	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10821382	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10821386	0.82[EUR][1000 genomes]
rs10821408	0.82[EUR][1000 genomes]
rs10821442	0.82[EUR][1000 genomes]
rs10992363	0.81[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993136	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993138	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993172	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10993173	0.82[EUR][1000 genomes]
rs10993174	0.83[EUR][1000 genomes]
rs10993230	0.82[EUR][1000 genomes]
rs10993257	0.82[EUR][1000 genomes]
rs10993327	0.82[EUR][1000 genomes]
rs10993330	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10993331	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10993333	0.82[EUR][1000 genomes]
rs10993342	0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs10993419	0.82[EUR][1000 genomes]
rs10993433	0.82[EUR][1000 genomes]
rs10993434	0.82[EUR][1000 genomes]
rs10993454	0.82[EUR][1000 genomes]
rs10993459	0.82[EUR][1000 genomes]
rs10993476	0.82[EUR][1000 genomes]
rs1155647	0.93[AFR][1000 genomes]
rs16905994	0.82[EUR][1000 genomes]
rs1866766	0.84[AFR][1000 genomes]
rs1992544	0.82[EUR][1000 genomes]
rs2043963	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119295	0.82[EUR][1000 genomes]
rs2119296	0.82[EUR][1000 genomes]
rs2149594	0.80[EUR][1000 genomes]
rs2196922	0.83[ASN][1000 genomes]
rs4142062	0.81[EUR][1000 genomes]
rs58259287	0.82[EUR][1000 genomes]
rs58691804	0.82[EUR][1000 genomes]
rs7025971	0.80[ASW][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap]
rs7036596	0.93[AFR][1000 genomes]
rs7047355	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714360	0.82[EUR][1000 genomes]
rs721830	0.83[EUR][1000 genomes]
rs721831	0.82[EUR][1000 genomes]
rs749194	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7848827	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858942	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861891	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862411	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863076	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7863792	0.82[EUR][1000 genomes]
rs7864499	0.86[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7875030	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:92693600-92703000	Weak transcription	NHDF-Ad	bronchial
3	chr9:92695800-92703800	Weak transcription	Aorta	Aorta
4	chr9:92697200-92698800	Enhancers	Colon Smooth Muscle	Colon
5	chr9:92697200-92698800	Enhancers	Right Atrium	heart
6	chr9:92697400-92698800	Enhancers	Rectal Smooth Muscle	rectum
7	chr9:92697600-92698800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:92698200-92698800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:92698200-92698800	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:92698200-92698800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:92698200-92701800	Weak transcription	Ovary	ovary
12	chr9:92698200-92704400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:92698400-92701600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr9:92698400-92703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:92698400-92703800	Weak transcription	Psoas Muscle	Psoas

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