Variant report

Variant	rs10821468
Chromosome Location	chr9:92735238-92735239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10117261	0.83[CHB][hapmap]
rs10465161	0.87[EUR][1000 genomes]
rs10465162	0.87[EUR][1000 genomes]
rs10761354	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10820845	0.83[CEU][hapmap]
rs10820848	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs10821337	0.85[EUR][1000 genomes]
rs10821382	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821386	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821408	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821442	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821475	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs10992155	0.83[TSI][hapmap]
rs10992363	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs10993136	0.86[EUR][1000 genomes]
rs10993138	0.86[EUR][1000 genomes]
rs10993172	0.87[EUR][1000 genomes]
rs10993173	0.84[EUR][1000 genomes]
rs10993174	0.85[EUR][1000 genomes]
rs10993230	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993257	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993327	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993330	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993331	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993333	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993334	0.85[EUR][1000 genomes]
rs10993342	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993419	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993433	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993434	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993454	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993459	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993476	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16905994	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1992544	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2043963	0.84[CEU][hapmap];0.83[TSI][hapmap]
rs2119295	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2119296	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2149594	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4142062	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58259287	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58691804	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs714360	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs721830	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs721831	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs749194	0.85[EUR][1000 genomes]
rs7862411	0.84[CEU][hapmap]
rs7863792	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7864499	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs7875030	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92725600-92738200	Weak transcription	Lung	lung
2	chr9:92733000-92736600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:92733400-92740200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:92733800-92738000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links