Variant report

Variant	rs2379196
Chromosome Location	chr9:92702983-92702984
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92693505..92695699-chr9:92701901..92704107,2	MCF-7	breast:
2	chr9:92687092..92689404-chr9:92701251..92704588,3	MCF-7	breast:
3	chr9:92702537..92704266-chr9:92708218..92709881,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10820884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10820923	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821065	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821308	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10821358	0.89[EUR][1000 genomes]
rs10821381	0.89[EUR][1000 genomes]
rs10992209	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992637	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993051	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993105	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10993510	0.84[EUR][1000 genomes]
rs1155647	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1319777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561948	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1561949	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1561950	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866766	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196921	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2196923	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7025971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7036596	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7466044	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7861478	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92693200-92703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:92693600-92703000	Weak transcription	NHDF-Ad	bronchial
3	chr9:92695800-92703800	Weak transcription	Aorta	Aorta
4	chr9:92698200-92704400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:92698400-92703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:92698400-92703800	Weak transcription	Psoas Muscle	Psoas
7	chr9:92698800-92703000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:92698800-92703800	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:92698800-92703800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:92698800-92704000	Weak transcription	Right Atrium	heart
11	chr9:92701400-92704600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr9:92701600-92704800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:92701800-92704800	Enhancers	Pancreas	Pancrea
14	chr9:92701800-92705600	Enhancers	Ovary	ovary
15	chr9:92702000-92703000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:92702200-92703600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:92702200-92705200	Enhancers	Placenta	Placenta
18	chr9:92702600-92703000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:92702800-92704800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:92702800-92705000	Enhancers	Fetal Heart	heart

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