Variant report

Variant	rs1561948
Chromosome Location	chr9:92707620-92707621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92218431..92220982-chr9:92706106..92707659,2	MCF-7	breast:
2	chr9:92706797..92708733-chr9:92712626..92715008,2	MCF-7	breast:
3	chr9:92706967..92708489-chr9:92716567..92719415,2	MCF-7	breast:
4	chr9:92217668..92218459-chr9:92707200..92707991,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10820884	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10820923	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821065	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821308	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821358	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821381	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992209	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992637	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10993051	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993105	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10993510	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1155647	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1319777	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1561949	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866766	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2196921	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196923	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2379196	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7025971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7036596	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7466044	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7861478	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92703800-92709800	Enhancers	Colon Smooth Muscle	Colon
2	chr9:92704400-92708800	Weak transcription	Brain Germinal Matrix	brain
3	chr9:92704800-92708600	Weak transcription	NHDF-Ad	bronchial
4	chr9:92705000-92709800	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:92705600-92708600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:92705600-92719200	Weak transcription	Ovary	ovary
7	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
8	chr9:92706800-92707800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:92706800-92708600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:92707000-92716200	Weak transcription	Psoas Muscle	Psoas
11	chr9:92707000-92716200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:92707600-92707800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links