Variant report

Variant	rs2196921
Chromosome Location	chr9:92708225-92708226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92706797..92708733-chr9:92712626..92715008,2	MCF-7	breast:
2	chr9:92702537..92704266-chr9:92708218..92709881,2	MCF-7	breast:
3	chr9:92706967..92708489-chr9:92716567..92719415,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10820884	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10820923	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821065	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821308	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821358	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821381	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10992209	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992338	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10992637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993051	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993105	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993510	0.87[EUR][1000 genomes]
rs1155647	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1319777	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1561948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561949	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1866766	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2196923	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2379196	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7025971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7036596	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7466044	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7861478	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2196921	C9orf153	cis	cerebellum	SCAN
rs2196921	NFIL3	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92703800-92709800	Enhancers	Colon Smooth Muscle	Colon
2	chr9:92704400-92708800	Weak transcription	Brain Germinal Matrix	brain
3	chr9:92704800-92708600	Weak transcription	NHDF-Ad	bronchial
4	chr9:92705000-92709800	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:92705600-92708600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:92705600-92719200	Weak transcription	Ovary	ovary
7	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
8	chr9:92706800-92708600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:92707000-92716200	Weak transcription	Psoas Muscle	Psoas
10	chr9:92707000-92716200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:92707800-92711400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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