Variant report

Variant	rs1338202
Chromosome Location	chr1:66992555-66992556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10493408	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208896	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208897	0.81[ASN][1000 genomes]
rs11208898	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11208900	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs11208901	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs11208902	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs12022565	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040232	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12043594	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048885	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs12567898	0.94[ASN][1000 genomes]
rs12568801	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338196	0.99[ASN][1000 genomes]
rs1338199	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338206	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338207	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445578	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1445579	0.93[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs17129039	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129041	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129043	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129062	0.92[ASN][1000 genomes]
rs17129064	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs4655614	1.00[ASN][1000 genomes]
rs4655616	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs57941297	0.92[ASN][1000 genomes]
rs6664942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665299	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693644	1.00[ASN][1000 genomes]
rs6699123	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6699568	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72934129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934131	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934142	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934143	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934153	0.84[ASN][1000 genomes]
rs7532400	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7532598	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532613	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7533806	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533837	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544247	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7544505	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7549881	1.00[ASN][1000 genomes]
rs967324	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
2	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:66988200-66993000	Weak transcription	NHDF-Ad	bronchial
4	chr1:66988400-66998200	Weak transcription	Osteobl	bone
5	chr1:66990800-66994800	Enhancers	NHLF	lung
6	chr1:66991600-66993600	Enhancers	Fetal Heart	heart
7	chr1:66991800-66998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:66992000-66993000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:66992000-66993000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:66992000-66993400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:66992000-66993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:66992000-66997400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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