Variant report

Variant	rs1338207
Chromosome Location	chr1:66994222-66994223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:66994082-66994802	SK-N-SH	brain:	n/a	chr1:66994661-66994670 chr1:66994657-66994673 chr1:66994654-66994675
2	EP300	chr1:66994124-66995000	SK-N-SH	brain:	n/a	chr1:66994503-66994511 chr1:66994363-66994371
3	EP300	chr1:66994204-66994466	SK-N-SH_RA	brain:	n/a	chr1:66994363-66994371
4	GATA3	chr1:66994211-66994793	SK-N-SH	brain:	n/a	chr1:66994661-66994670 chr1:66994657-66994673 chr1:66994654-66994675
5	GATA3	chr1:66994121-66994858	SH-SY5Y	brain:	n/a	chr1:66994661-66994670 chr1:66994657-66994673 chr1:66994654-66994675
6	GATA2	chr1:66994133-66994867	SH-SY5Y	brain:	n/a	chr1:66994661-66994670 chr1:66994657-66994673 chr1:66994654-66994675
7	EP300	chr1:66994180-66994688	SK-N-SH_RA	brain:	n/a	chr1:66994503-66994511 chr1:66994363-66994371

Variant related genes	Relation type
SGIP1	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10493408	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208896	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11208897	0.81[ASN][1000 genomes]
rs11208898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11208900	0.83[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs11208901	0.83[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs11208902	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs12022565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12043594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048885	0.83[CEU][hapmap];0.90[YRI][hapmap]
rs12567898	0.94[ASN][1000 genomes]
rs12568801	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338196	0.99[ASN][1000 genomes]
rs1338199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338201	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1338202	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338203	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1338206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445578	0.81[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs1445579	0.81[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs17129039	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129041	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129043	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17129062	0.92[ASN][1000 genomes]
rs17129064	0.81[CEU][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[ASN][1000 genomes]
rs4655614	1.00[ASN][1000 genomes]
rs4655616	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs57941297	0.92[ASN][1000 genomes]
rs6664942	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665299	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689119	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6689313	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693644	1.00[ASN][1000 genomes]
rs6699123	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6699568	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72934129	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934142	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934143	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934153	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7532400	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7532598	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532613	0.86[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7533806	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7533837	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544247	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7544505	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7549881	1.00[ASN][1000 genomes]
rs967324	0.89[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66988400-66998200	Weak transcription	Osteobl	bone
2	chr1:66990800-66994800	Enhancers	NHLF	lung
3	chr1:66991800-66998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:66992000-66997400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:66992600-66995000	Enhancers	HUVEC	blood vessel
6	chr1:66993400-66994600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:66993600-66997400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:66993600-66997400	Weak transcription	NHDF-Ad	bronchial
9	chr1:66993600-66997600	Weak transcription	Fetal Heart	heart
10	chr1:66993600-66998200	Weak transcription	NHEK	skin
11	chr1:66993800-66994600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:66993800-66995200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:66993800-66998000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:66994000-66998000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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