Variant report

Variant	rs11208902
Chromosome Location	chr1:67005622-67005623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10493408	0.92[ASN][1000 genomes]
rs11208896	0.92[ASN][1000 genomes]
rs11208898	0.91[ASN][1000 genomes]
rs11208900	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11208901	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12022565	0.92[ASN][1000 genomes]
rs12025668	0.84[ASN][1000 genomes]
rs12040232	0.92[ASN][1000 genomes]
rs12043594	0.92[ASN][1000 genomes]
rs12046904	0.84[ASN][1000 genomes]
rs12048885	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs12567898	0.98[ASN][1000 genomes]
rs12568801	0.91[ASN][1000 genomes]
rs1338196	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1338199	0.92[ASN][1000 genomes]
rs1338201	0.91[ASN][1000 genomes]
rs1338202	0.92[ASN][1000 genomes]
rs1338203	0.92[ASN][1000 genomes]
rs1338206	0.92[ASN][1000 genomes]
rs1338207	0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs1445578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1445579	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17129039	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs17129041	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs17129043	0.92[ASN][1000 genomes]
rs17129062	1.00[ASN][1000 genomes]
rs17129064	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17129065	0.84[ASN][1000 genomes]
rs4655614	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4655616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57941297	1.00[ASN][1000 genomes]
rs6664942	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs6665299	0.92[ASN][1000 genomes]
rs6689119	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs6689313	0.94[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs6693644	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6697068	0.83[ASN][1000 genomes]
rs6699123	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs6699568	0.98[ASN][1000 genomes]
rs72916320	0.83[ASN][1000 genomes]
rs72934129	0.92[ASN][1000 genomes]
rs72934131	0.92[ASN][1000 genomes]
rs72934142	0.92[ASN][1000 genomes]
rs72934143	0.92[ASN][1000 genomes]
rs72934153	0.91[ASN][1000 genomes]
rs7532400	1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs7532598	1.00[ASN][1000 genomes]
rs7532613	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7533806	0.92[ASN][1000 genomes]
rs7533837	0.92[ASN][1000 genomes]
rs7544247	0.98[ASN][1000 genomes]
rs7544505	1.00[ASN][1000 genomes]
rs7549881	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs967324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000200-67006400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:67000400-67008000	Weak transcription	Lung	lung
3	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:67001000-67006200	Weak transcription	HepG2	liver
6	chr1:67001000-67008000	Weak transcription	Left Ventricle	heart
7	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
8	chr1:67001600-67011000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:67001800-67006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:67002000-67010600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:67002200-67006400	Weak transcription	Osteobl	bone
12	chr1:67002600-67006000	Weak transcription	HUVEC	blood vessel
13	chr1:67002600-67006400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:67002800-67008200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr1:67003000-67006200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
17	chr1:67003800-67008000	Enhancers	Brain Anterior Caudate	brain
18	chr1:67004200-67009200	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:67004200-67009600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
21	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
22	chr1:67004400-67006600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:67004800-67006000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:67004800-67006000	Weak transcription	Fetal Brain Male	brain
25	chr1:67004800-67006600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:67004800-67006800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:67004800-67006800	Enhancers	NHEK	skin
28	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
29	chr1:67005000-67007000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr1:67005000-67007200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr1:67005000-67007200	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr1:67005000-67007400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr1:67005000-67008600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr1:67005200-67006400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr1:67005200-67007000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr1:67005200-67007000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:67005200-67007200	Enhancers	NH-A	brain
38	chr1:67005400-67005800	Enhancers	Fetal Brain Female	brain
39	chr1:67005400-67006800	Enhancers	Fetal Lung	lung
40	chr1:67005400-67007000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr1:67005400-67007000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr1:67005400-67007200	Enhancers	H1 Cell Line	embryonic stem cell
43	chr1:67005400-67007200	Genic enhancers	Muscle Satellite Cultured Cells	--
44	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
45	chr1:67005600-67006000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr1:67005600-67006000	Enhancers	NHLF	lung
47	chr1:67005600-67006400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr1:67005600-67006400	Weak transcription	Aorta	Aorta
49	chr1:67005600-67007200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr1:67005600-67007200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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