Variant report

Variant	rs72916320
Chromosome Location	chr1:67011400-67011401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10493411	0.88[EUR][1000 genomes]
rs11208900	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11208901	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11208902	0.83[ASN][1000 genomes]
rs11208910	0.84[EUR][1000 genomes]
rs12025668	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12034344	0.84[EUR][1000 genomes]
rs12046904	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12048885	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12565798	0.86[EUR][1000 genomes]
rs12567556	0.84[EUR][1000 genomes]
rs12567898	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12568801	0.87[EUR][1000 genomes]
rs1445578	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1445579	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17129039	0.87[EUR][1000 genomes]
rs17129041	0.87[EUR][1000 genomes]
rs17129043	0.87[EUR][1000 genomes]
rs17129062	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17129064	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17129065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3795531	0.86[EUR][1000 genomes]
rs4655616	0.83[ASN][1000 genomes]
rs57941297	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6697068	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6699123	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6699568	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6701988	0.84[EUR][1000 genomes]
rs72934143	0.87[EUR][1000 genomes]
rs72934153	0.82[EUR][1000 genomes]
rs7519639	0.88[EUR][1000 genomes]
rs7532400	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7532598	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7532613	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7544247	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7544505	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs967324	0.82[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
6	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
7	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
8	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
9	chr1:67006800-67012000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:67007000-67011400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:67007800-67012400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:67008000-67012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:67008400-67018000	Weak transcription	Lung	lung
16	chr1:67008600-67012600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:67008600-67013000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:67009000-67019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr1:67009200-67011400	Enhancers	Left Ventricle	heart
20	chr1:67009400-67011800	Weak transcription	Right Atrium	heart
21	chr1:67009400-67013800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr1:67009600-67011400	Enhancers	HepG2	liver
23	chr1:67009600-67018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:67009600-67019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:67009800-67028200	Weak transcription	Brain Germinal Matrix	brain
26	chr1:67010000-67013400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:67010000-67018600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:67010000-67018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
30	chr1:67010600-67011400	Enhancers	Aorta	Aorta
31	chr1:67010800-67012400	Enhancers	Fetal Lung	lung
32	chr1:67010800-67018600	Weak transcription	Osteobl	bone
33	chr1:67011000-67011400	Enhancers	Stomach Smooth Muscle	stomach
34	chr1:67011000-67011600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:67011000-67013200	Enhancers	NHLF	lung
36	chr1:67011000-67028000	Weak transcription	HUVEC	blood vessel
37	chr1:67011200-67011800	Enhancers	Fetal Brain Male	brain
38	chr1:67011200-67013200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:67011200-67013200	Weak transcription	Brain Anterior Caudate	brain
40	chr1:67011200-67013200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr1:67011200-67021800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr1:67011200-67022000	Weak transcription	Pancreas	Pancrea
43	chr1:67011400-67012200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr1:67011400-67013200	Weak transcription	Aorta	Aorta
45	chr1:67011400-67017800	Weak transcription	Left Ventricle	heart

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