Variant report

Variant	rs17129065
Chromosome Location	chr1:67009694-67009695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10493411	0.88[EUR][1000 genomes]
rs11208900	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208901	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11208902	0.84[ASN][1000 genomes]
rs11208910	0.84[EUR][1000 genomes]
rs12025668	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034344	0.84[EUR][1000 genomes]
rs12046904	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12048885	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12565798	0.86[EUR][1000 genomes]
rs12567556	0.84[EUR][1000 genomes]
rs12567898	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12568801	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1445578	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1445579	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129039	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17129041	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17129043	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17129062	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17129064	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3795531	0.86[EUR][1000 genomes]
rs4655616	0.84[ASN][1000 genomes]
rs57941297	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697068	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6699123	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6699568	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6701988	0.84[EUR][1000 genomes]
rs72916320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72934143	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72934153	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7519639	0.88[EUR][1000 genomes]
rs7532400	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7532598	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7532613	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7544247	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7544505	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs967324	0.83[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67001600-67011000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:67002000-67010600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
7	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
8	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
9	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
10	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
11	chr1:67005800-67010600	Weak transcription	Fetal Brain Female	brain
12	chr1:67006000-67011000	Enhancers	HUVEC	blood vessel
13	chr1:67006400-67011200	Weak transcription	Fetal Brain Male	brain
14	chr1:67006800-67012000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:67007000-67011400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr1:67007200-67010600	Weak transcription	Aorta	Aorta
18	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:67007800-67012400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:67008000-67012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:67008200-67010200	Enhancers	Hela-S3	cervix
22	chr1:67008400-67010000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:67008400-67010200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr1:67008400-67010600	Enhancers	NHLF	lung
25	chr1:67008400-67010800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:67008400-67018000	Weak transcription	Lung	lung
27	chr1:67008600-67010000	Enhancers	NH-A	brain
28	chr1:67008600-67011200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr1:67008600-67011200	Enhancers	Brain Anterior Caudate	brain
30	chr1:67008600-67012600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:67008600-67013000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:67008800-67009800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:67008800-67010000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:67008800-67010000	Enhancers	Liver	Liver
35	chr1:67008800-67010000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr1:67008800-67010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:67009000-67010000	Enhancers	Fetal Kidney	kidney
38	chr1:67009000-67011000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:67009000-67019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr1:67009200-67009800	Enhancers	Brain Germinal Matrix	brain
41	chr1:67009200-67010000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr1:67009200-67010200	Enhancers	Osteobl	bone
43	chr1:67009200-67011400	Enhancers	Left Ventricle	heart
44	chr1:67009400-67009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr1:67009400-67011800	Weak transcription	Right Atrium	heart
46	chr1:67009400-67013800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr1:67009600-67010800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr1:67009600-67010800	Weak transcription	Fetal Lung	lung
49	chr1:67009600-67010800	Weak transcription	Pancreas	Pancrea
50	chr1:67009600-67010800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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